View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_207 (Length: 249)
Name: NF11385A_low_207
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_207 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: scaffold0027 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 6 - 225
Target Start/End: Original strand, 45715 - 45930
Alignment:
| Q |
6 |
ctgagatgaacctgattctttgggatcattctggtatagaaaacagcgtttgaacagtaaaaaatctgcatgtgggtgcagtcactatgtaattagcctg |
105 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45715 |
ctgacatgaacctgattctttgggatcattctggtatagaaaacagtgtttgaacagtaaaaaatttgcatgtgggtgcagtcactatgtaattagcctg |
45814 |
T |
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| Q |
106 |
aaattgagcataggattcctatcacatagaggtactcctacgtactccctcatttttgcagggatgatgctactcggcattccaaatctttgtttctttt |
205 |
Q |
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||||||| |||||||||||||||||||||||||||||| |||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
45815 |
aaattgaacataggattcctatcacatagaggtactcc----tactccctaatttttgtagggaagatgctactcggcattccaaatctttgtttctttt |
45910 |
T |
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| Q |
206 |
aataaaaattctttcatgag |
225 |
Q |
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|||||||||||||||||||| |
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| T |
45911 |
aataaaaattctttcatgag |
45930 |
T |
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