View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11385A_low_209 (Length: 248)

Name: NF11385A_low_209
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11385A_low_209
NF11385A_low_209
[»] chr1 (5 HSPs)
chr1 (133-246)||(47189293-47189406)
chr1 (108-222)||(51285246-51285361)
chr1 (126-222)||(48494876-48494972)
chr1 (108-208)||(47508236-47508337)
chr1 (133-168)||(19659746-19659781)
[»] chr7 (1 HSPs)
chr7 (149-222)||(32635363-32635436)
[»] chr8 (3 HSPs)
chr8 (107-208)||(39312533-39312635)
chr8 (131-168)||(30253439-30253476)
chr8 (108-151)||(21468245-21468289)
[»] chr2 (2 HSPs)
chr2 (45-107)||(40210356-40210417)
chr2 (126-168)||(4009273-4009315)
[»] scaffold1342 (1 HSPs)
scaffold1342 (126-168)||(1246-1288)
[»] chr6 (1 HSPs)
chr6 (125-207)||(11139352-11139434)
[»] scaffold0026 (1 HSPs)
scaffold0026 (108-168)||(91558-91619)


Alignment Details
Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 133 - 246
Target Start/End: Original strand, 47189293 - 47189406
Alignment:
Q  133 ggatggccatggcctacccattatttttgggaaattgccaaaatatccttgagttaatacgaaatttacaaccatgacaccatcacttttttctgaaaca 232  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||| |||||||||||||| |||||||||||||||||||    
T  47189293 ggatggccatggcctacccattatttttgggaaattaccaaaatacccttgagttaatatgaaatatacaaccatgacactatcacttttttctgaaaca 47189392  T
Q  233 acgctcttctctct 246  Q
    ||||||||||||||    
T  47189393 acgctcttctctct 47189406  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 108 - 222
Target Start/End: Original strand, 51285246 - 51285361
Alignment:
Q  108 cagtggcggagacacgtagg-acaggggatggccatggcctacccattatttttgggaaattgccaaaatatccttgagttaatacgaaatttacaacca 206  Q
    ||||||||||| ||||| || |||||||| ||||||||||  ||||||||||||| |||||| |||||||| |||| ||||||||  |||| ||||||||    
T  51285246 cagtggcggagccacgtggggacaggggaaggccatggccaccccattatttttgagaaattaccaaaatacccttaagttaatataaaatctacaacca 51285345  T
Q  207 tgacaccatcactttt 222  Q
    || |||| ||||||||    
T  51285346 tgccaccctcactttt 51285361  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 126 - 222
Target Start/End: Complemental strand, 48494972 - 48494876
Alignment:
Q  126 ggacaggggatggccatggcctacccattatttttgggaaattgccaaaatatccttgagttaatacgaaatttacaaccatgacaccatcactttt 222  Q
    ||||||||||||||||||  |  |||||||||| ||| ||||| |||||||| ||||||||||||| |||||||||||||||| |||| ||| ||||    
T  48494972 ggacaggggatggccatgatcgtcccattatttgtggaaaattaccaaaatacccttgagttaatatgaaatttacaaccatgccaccttcagtttt 48494876  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 108 - 208
Target Start/End: Original strand, 47508236 - 47508337
Alignment:
Q  108 cagtggcggagacacgt-aggacaggggatggccatggcctacccattatttttgggaaattgccaaaatatccttgagttaatacgaaatttacaacca 206  Q
    ||||||||||| ||||| ||||||||||||||||||||||  ||||| | |||  ||||||| |||||||| ||||| ||||| | ||| ||||||||||    
T  47508236 cagtggcggagccacgtgaggacaggggatggccatggccaccccatcaatttgtggaaattaccaaaatacccttgggttaaaatgaattttacaacca 47508335  T
Q  207 tg 208  Q
    ||    
T  47508336 tg 47508337  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 168
Target Start/End: Complemental strand, 19659781 - 19659746
Alignment:
Q  133 ggatggccatggcctacccattatttttgggaaatt 168  Q
    ||||||||||||||| ||||||||||||||||||||    
T  19659781 ggatggccatggcctccccattatttttgggaaatt 19659746  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 32635363 - 32635436
Alignment:
Q  149 cccattatttttgggaaattgccaaaatatccttgagttaatacgaaatttacaaccatgacaccatcactttt 222  Q
    |||||||||| || |||||| |||||||| ||||||||||||| |||||||||||||||| |||| ||||||||    
T  32635363 cccattatttatgagaaattaccaaaatacccttgagttaatatgaaatttacaaccatgccaccctcactttt 32635436  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 107 - 208
Target Start/End: Original strand, 39312533 - 39312635
Alignment:
Q  107 gcagtggcggagacacgt-aggacaggggatggccatggcctacccattatttttgggaaattgccaaaatatccttgagttaatacgaaatttacaacc 205  Q
    |||||||||||| ||||| |||||| |||||||||||||||  ||||||| |||  ||||||| |||||||| ||||| ||||| | ||| |||||||||    
T  39312533 gcagtggcggagccacgtgaggacatgggatggccatggccaccccattaatttgtggaaattaccaaaatacccttgggttaaaatgaattttacaacc 39312632  T
Q  206 atg 208  Q
    |||    
T  39312633 atg 39312635  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 168
Target Start/End: Complemental strand, 30253476 - 30253439
Alignment:
Q  131 ggggatggccatggcctacccattatttttgggaaatt 168  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  30253476 ggggatggcaatggcctatccattatttttgggaaatt 30253439  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 151
Target Start/End: Original strand, 21468245 - 21468289
Alignment:
Q  108 cagtggcggagacacgt-aggacaggggatggccatggcctaccc 151  Q
    ||||||||||||||||| |||||| || |||||||||||||||||    
T  21468245 cagtggcggagacacgtgaggacatggtatggccatggcctaccc 21468289  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 40210417 - 40210356
Alignment:
Q  45 tattttagattgagaagaaaaagtatgggtcatgcaaactggtgtttccgagcactggttaag 107  Q
    |||||||||||||||||||||| |||||||||||||||| |||| || |||||||||||||||    
T  40210417 tattttagattgagaagaaaaa-tatgggtcatgcaaaccggtgctttcgagcactggttaag 40210356  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 168
Target Start/End: Original strand, 4009273 - 4009315
Alignment:
Q  126 ggacaggggatggccatggcctacccattatttttgggaaatt 168  Q
    |||||||||||||||||||||| ||||||||||||| ||||||    
T  4009273 ggacaggggatggccatggcctgcccattatttttgtgaaatt 4009315  T

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Target: scaffold1342 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1342
Description:

Target: scaffold1342; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 168
Target Start/End: Original strand, 1246 - 1288
Alignment:
Q  126 ggacaggggatggccatggcctacccattatttttgggaaatt 168  Q
    |||||||||||||||||||||| ||||||||||||| ||||||    
T  1246 ggacaggggatggccatggcctgcccattatttttgtgaaatt 1288  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 207
Target Start/End: Original strand, 11139352 - 11139434
Alignment:
Q  125 aggacaggggatggccatggcctacccattatttttgggaaattgccaaaatatccttgagttaatacgaaatttacaaccat 207  Q
    ||||| ||||||||||||||||| |||||||||||   ||||||  ||||||| ||||  ||||| | |||||||||||||||    
T  11139352 aggactggggatggccatggcctccccattattttatagaaattatcaaaatacccttaggttaaaatgaaatttacaaccat 11139434  T

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Target: scaffold0026 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 91558 - 91619
Alignment:
Q  108 cagtggcggagacacgt-aggacaggggatggccatggcctacccattatttttgggaaatt 168  Q
    |||||| |||| ||||| ||||||||| |||||||||||||||||| ||||| || ||||||    
T  91558 cagtggtggagccacgtgaggacagggtatggccatggcctacccagtatttctgtgaaatt 91619  T

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