View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_21 (Length: 435)
Name: NF11385A_low_21
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_21 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 16 - 435
Target Start/End: Complemental strand, 53676481 - 53676062
Alignment:
| Q |
16 |
atcaccaaactcatcgcttgggtaggaggaagagaagaaaaagaaagtgggatcccaactatccaaagccaaataggagtggctataactttttctttgc |
115 |
Q |
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| T |
53676481 |
atcaccaaactcatcgcttgggtaggaggaagagaagaaaaagaaagtgggatcccaactatccaaagccaaataggagtggctataactttttctttgc |
53676382 |
T |
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| Q |
116 |
tgaaaagcattacaagctcaaagaactctacccaaacagagaaagggagtttaccaaaatgattggtcagtcctggaatagtctcagccctgaagaaaga |
215 |
Q |
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| T |
53676381 |
tgaaaagcattacaagctcaaagaactctacccaaacagagaaagggagtttaccaaaatgattggtcagtcctggaatagtctcagccctgaagaaaga |
53676282 |
T |
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| Q |
216 |
atggtaattaaaagggtcatttcatttgtgtgtattgctttatcctaattggtctttacattgttgtttatctagaatctggttatcaaagttaatagtt |
315 |
Q |
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| T |
53676281 |
atggtaattaaaagggtcatttcatttgtgtgtattgctttatcctaattggtctttacattgttgtttatctagaatctggttatcaaagttaatagtt |
53676182 |
T |
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| Q |
316 |
ttgatttgagttagttcaaatgtagttatatgtgtgttcgcctaatattgcagatttaccaaaacattggcttaagggacaaagaaaggtacaaaagaga |
415 |
Q |
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| T |
53676181 |
ttgatttgagttagttcaaatgtagttatatgtgtgttcgcctaatattgcagatttaccaaaacattggcttaagggacaaagaaaggtacaaaagaga |
53676082 |
T |
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| Q |
416 |
attgtcggagtacaaacaga |
435 |
Q |
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| T |
53676081 |
attgtcggagtacaaacaga |
53676062 |
T |
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