View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_212 (Length: 248)
Name: NF11385A_low_212
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_212 |
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Alignment Details
Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 14 - 173
Target Start/End: Complemental strand, 4119798 - 4119639
Alignment:
| Q |
14 |
tcaagggaactggattcgcttaccaccgtatcggaatcttctaaaatgtcacgacagagttgtcatgaatcgtcaaacgccttttcctcgttcgcctgtg |
113 |
Q |
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| T |
4119798 |
tcaaggaaactgaattccctgaccactgtatcagaatcttctaaaatgtcacgacagagttgtcatgaatcgtcaaatgccttttcctcgttcgcctgtg |
4119699 |
T |
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| Q |
114 |
atgtttcatatatatctcttgataagaattaattcaataaaaaa--tatatgaagttttatt |
173 |
Q |
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| T |
4119698 |
atgtttcat--atatctcttgataagaactaattcaataaaaaatgtatatgaagttttatt |
4119639 |
T |
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Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 172 - 240
Target Start/End: Complemental strand, 4119408 - 4119340
Alignment:
| Q |
172 |
ttctagactatgatgatcagtatgttcccaattcatcatatctcatgaaacgtcaccacaaagttcatc |
240 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4119408 |
ttctagactatgatgatcagcatgttcccaattcatcatatctcctgaaacgtcaccacaaagttcatc |
4119340 |
T |
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