View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_213 (Length: 248)
Name: NF11385A_low_213
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_213 |
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Alignment Details
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 113 - 224
Target Start/End: Original strand, 32803518 - 32803629
Alignment:
| Q |
113 |
aacatatacagtaatgaaaaattaatagaagcacttaaaagcaacttcataattcaccaggatcaagaagattctgatcttcatccgagaaaacatccac |
212 |
Q |
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| T |
32803518 |
aacatatacagtaatgaaaaattaatagaagcacttaaaagcaacttcataattcaccaggatcaaaaagattctgatcttcatccgagaaaacatccac |
32803617 |
T |
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| Q |
213 |
aactacactagc |
224 |
Q |
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| T |
32803618 |
aactacactagc |
32803629 |
T |
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Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 32800724 - 32800611
Alignment:
| Q |
9 |
aaaaagtaaaaacttgaattgggtgctattttagtagagagnnnnnnnngagttaaaacaacataaaggaaatgacaatgttaaccctaaagaatagacg |
108 |
Q |
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| T |
32800724 |
aaaaagtgaaaacttgaattgggtgctattttagtagagagaaaaatgagagttagaacaacataaaggaaatgacaatgttaaccctaaagaatagacg |
32800625 |
T |
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| Q |
109 |
ctgcaacatataca |
122 |
Q |
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| T |
32800624 |
ctacaatatataca |
32800611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 207
Target Start/End: Original strand, 49028077 - 49028147
Alignment:
| Q |
137 |
atagaagcacttaaaagcaacttcataattcaccaggatcaagaagattctgatcttcatccgagaaaaca |
207 |
Q |
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|||| ||||||| || |||||||| |||||||||||||||| |||||||||||| |||| ||| ||||| |
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| T |
49028077 |
ataggagcacttggaaacaacttcaaaattcaccaggatcaaacagattctgatctccatcggaggaaaca |
49028147 |
T |
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