View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_214 (Length: 247)
Name: NF11385A_low_214
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_214 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 5898630 - 5898392
Alignment:
| Q |
9 |
gagatgaagaaccagagctgcttatatcaggagaattgttaatgagggagtttgaagaatgacgcaggccgacttgctgcagttgctgcaacagattctt |
108 |
Q |
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| T |
5898630 |
gagaagaagaaccagagctgcttagatcagaagaattgttaatgagggagtttgaagaatgacgcaggccgacttgctgcagttgctgcaacagattctt |
5898531 |
T |
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| Q |
109 |
atggccatagttctaacgaatgtagctatccttgatttaggatgttaacaccattaattttttccttaacctttgaacctgtttggtcaatggtcatcaa |
208 |
Q |
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| T |
5898530 |
atggtcatagttccaacgaatgtagctatccttgatttaggatgttaacaccattaattttttccttaacctttgaacctgtttggtcaatggtcatcaa |
5898431 |
T |
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| Q |
209 |
ggaaaagctaaaatgatttttgtgattgtagataagtac |
247 |
Q |
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| T |
5898430 |
ggaaaagctaaaatgatttttgtgattgtagataagtac |
5898392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 243
Target Start/End: Complemental strand, 5860445 - 5860217
Alignment:
| Q |
14 |
gaagaaccagagctgcttatatcaggagaattgttaatgagggagtttgaagaatgacgcaggccgacttgctgcagttgctgcaacagattcttatggc |
113 |
Q |
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| T |
5860445 |
gaagaaccagagctgcttagatcaggagaattgttaatgagggagtttgaagaatgacacaggccgacttgctacagttgctgcaacagattcttatggt |
5860346 |
T |
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| Q |
114 |
catagttctaacgaatgtagctatccttgatttaggatgttaacaccattaattttttccttaacctttgaacctgtttggtcaatggtcatcaaggaaa |
213 |
Q |
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| T |
5860345 |
catagctccaacgaatgtagctatccttgatttaggatgttaacaccattcattttttccttaacctttgaaccagtttggtcaatgatcatcaaggaaa |
5860246 |
T |
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| Q |
214 |
agctaaaatgatttttgtgattgtagataa |
243 |
Q |
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| T |
5860245 |
agctaaaatga-ttttgtgattgtagataa |
5860217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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