View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_216 (Length: 247)
Name: NF11385A_low_216
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_216 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 43703074 - 43703302
Alignment:
| Q |
19 |
acatcaacagttacacttatgcagagaaatttacaccaaagtttcatgttagacttgctttttgagcaaaataaaacatactttatttcactacaaagtt |
118 |
Q |
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| T |
43703074 |
acatcaacagttacacttatgcagagaaatttacaccaaagtttcatgttagacttgctttttgagcaaaataaaacatactttatttcactacaaagtt |
43703173 |
T |
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| Q |
119 |
taaacttggttttattcacattacttttatcaccaacatgagttggtccgacttgaaggggctcggatcccttgagcaagaggtataggattcaaaattt |
218 |
Q |
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| T |
43703174 |
taaactttgttttattcacattacttttatcgccaacatgagttggtccgacttgaaggggctcggatcccttgagcaagaggtataggattcaaaattt |
43703273 |
T |
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| Q |
219 |
agtttttgtgaatcaagcaaattctgttg |
247 |
Q |
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| T |
43703274 |
agtttttgtgaatcaagcaaattctgttg |
43703302 |
T |
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