View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_217 (Length: 247)
Name: NF11385A_low_217
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_217 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 53985019 - 53984798
Alignment:
| Q |
21 |
ggatgctagacgtgcttcaacatagtcccaaacttcaacatcgtaccattcatcaggtttaagatatgatagggataatttgacgatttaatttaatttg |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
53985019 |
ggatgctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggtttaagatatgataaggataatttgacgatttaatttaatttg |
53984920 |
T |
|
| Q |
121 |
gtagatctacctctacacacgtcttaatgctccctccatcttattacaggaaatagagaatggaatttatgaggacatttggcactatccacaaaatatt |
220 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53984919 |
gtaaatctacctctacacacgtcttaatgctccctccatcttattacaggaaatagagaatggaatttatgaggacatttggcactatccacaaaatatt |
53984820 |
T |
|
| Q |
221 |
ccgacgtgcatttcatctcagt |
242 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
53984819 |
ccgacgtgcatttcatctcagt |
53984798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 53971313 - 53971094
Alignment:
| Q |
21 |
ggatgctagacgtgcttcaacatagtcccaaacttcaacatcgtaccattcatcaggtttaaga-tatgatagggataatttgacgatttaatttaattt |
119 |
Q |
| |
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|||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||| | | | |||||| ||||||||||| ||||||||||||||| |
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| T |
53971313 |
ggatgctagacgtgctctaacatagtccgaaacttcaacatcttaccattcatcaggtatgatactatgattaggataatttgatgatttaatttaattt |
53971214 |
T |
|
| Q |
120 |
ggtagatctacctctacacacgtcttaatgctccctccatcttattacaggaaatagagaatggaatttatgaggacatttggcactatccacaaaatat |
219 |
Q |
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|||| || ||||||| ||| |||||| | | |||||| ||||||| |||| || ||| |||||||||||||||||| |||||| | ||||||||| | |
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| T |
53971213 |
ggtaaatatacctct--acatgtcttactaccccctccgtcttattgtaggagatggaggatggaatttatgaggacaattggcaggacccacaaaatgt |
53971116 |
T |
|
| Q |
220 |
tccgacgtgcatttcatctcag |
241 |
Q |
| |
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|||||| || |||||||||||| |
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| T |
53971115 |
tccgacatgtatttcatctcag |
53971094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 16164056 - 16163998
Alignment:
| Q |
21 |
ggatgctagacgtgcttcaacatagtcccaaacttcaacatcgtaccattcatcaggtt |
79 |
Q |
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|||||||||| ||||||||||| || ||||| ||| |||||| | |||||||||||||| |
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| T |
16164056 |
ggatgctagaagtgcttcaacagaggcccaagcttgaacatcttgccattcatcaggtt |
16163998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 19935380 - 19935421
Alignment:
| Q |
39 |
aacatagtcccaaacttcaacatcgtaccattcatcaggttt |
80 |
Q |
| |
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||||| |||||||||||||| ||| ||||||||||||||||| |
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|
| T |
19935380 |
aacattgtcccaaacttcaaaatcttaccattcatcaggttt |
19935421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 19966519 - 19966560
Alignment:
| Q |
39 |
aacatagtcccaaacttcaacatcgtaccattcatcaggttt |
80 |
Q |
| |
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||||| |||||||||||||| ||| ||||||||||||||||| |
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|
| T |
19966519 |
aacattgtcccaaacttcaaaatcttaccattcatcaggttt |
19966560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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