View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_224 (Length: 245)
Name: NF11385A_low_224
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_224 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 7 - 245
Target Start/End: Original strand, 30315727 - 30315965
Alignment:
| Q |
7 |
gttgagaggctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagc |
106 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30315727 |
gttgagagtctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagacaaagggagc |
30315826 |
T |
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| Q |
107 |
ctatttcttcaattttgggagctttttaatgagtgatcaaatattatgcatgtatgctgtaaggaactatagctcatagtgagcaaagaataaaacgtca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
30315827 |
ctatttcttcaattttgggagctttttaatgagtgatcaaatgttatgcatgtatgctgtaaggaactatagctcatagtgagcaaagaataaaacggca |
30315926 |
T |
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| Q |
207 |
ttatcttgtaactataactagagttccaccttttgtact |
245 |
Q |
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||||||||||| | ||||||||||||||||||||||||| |
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| T |
30315927 |
ttatcttgtaattgtaactagagttccaccttttgtact |
30315965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 7 - 220
Target Start/End: Original strand, 30287193 - 30287406
Alignment:
| Q |
7 |
gttgagaggctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagc |
106 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30287193 |
gttgagagtctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagacaaagggagc |
30287292 |
T |
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| Q |
107 |
ctatttcttcaattttgggagctttttaatgagtgatcaaatattatgcatgtatgctgtaaggaactatagctcatagtgagcaaagaataaaacgtca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||| || |
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| T |
30287293 |
ctatttcttcaattttgggagctttttaatgagtgatcaaatgttatgcatgtatgctgtaaggaactatagctcataatgagaaaagaataaaacggca |
30287392 |
T |
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| Q |
207 |
ttatcttgtaacta |
220 |
Q |
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|||||||||||||| |
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| T |
30287393 |
ttatcttgtaacta |
30287406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 7 - 239
Target Start/End: Original strand, 30304861 - 30305093
Alignment:
| Q |
7 |
gttgagaggctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagc |
106 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30304861 |
gttgagagtctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagacaaagggagc |
30304960 |
T |
|
| Q |
107 |
ctatttcttcaattttgggagctttttaatgagtgatcaaatattatgcatgtatgctgtaaggaactatagctcatagtgagcaaagaataaaacgtca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | || ||| |||||||| ||| ||||| | |||||||||| || |
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| T |
30304961 |
ctatttcttcaattttgggagctttttaatgagtgatcaaatattatgcaagtatgatatatggagctatagctaataatgagcgatgaataaaacggca |
30305060 |
T |
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| Q |
207 |
ttatcttgtaactataactagagttccaccttt |
239 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
30305061 |
ttatcttgtaactataactagagttccaccttt |
30305093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 7 - 216
Target Start/End: Original strand, 30300069 - 30300278
Alignment:
| Q |
7 |
gttgagaggctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagc |
106 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30300069 |
gttgagagtctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagacaaagggagc |
30300168 |
T |
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| Q |
107 |
ctatttcttcaattttgggagctttttaatgagtgatcaaatattatgcatgtatgctgtaaggaactatagctcatagtgagcaaagaataaaacgtca |
206 |
Q |
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||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||| || |
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| T |
30300169 |
ttatatcttcaattttgggagtattttaatgagtgatcaaatattatgcttgtatgctgtaaggagtcatagctcatagtgagcagagaataaaacggca |
30300268 |
T |
|
| Q |
207 |
ttatcttgta |
216 |
Q |
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||||||||| |
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| T |
30300269 |
atatcttgta |
30300278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 7 - 235
Target Start/End: Original strand, 30292227 - 30292438
Alignment:
| Q |
7 |
gttgagaggctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagc |
106 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30292227 |
gttgagagtctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagc |
30292326 |
T |
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| Q |
107 |
ctatttcttcaattttgggagctttttaatgagtgatcaaatattatgcatgtatgctgtaaggaactatagctcatagtgagcaaagaataaaacgtca |
206 |
Q |
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||||||||||||||| |||| | |||||||| |||||||| |||||||| || |||||||||||||||| |||||||||| || |
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| T |
30292327 |
ctatttcttcaatttcgggaacgttttaatg--------cttattatgcttgtatgctcta---------agctcatagtgagcaatgaataaaacggca |
30292409 |
T |
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| Q |
207 |
ttatcttgtaactataactagagttccac |
235 |
Q |
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||| ||||||||||||||||||||||||| |
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| T |
30292410 |
ttagcttgtaactataactagagttccac |
30292438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 46810518 - 46810582
Alignment:
| Q |
7 |
gttgagaggctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaaggga |
71 |
Q |
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||||| |||||| ||||||| || |||||||||||||||||||||||||| |||||||||||||| |
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| T |
46810518 |
gttgataggctaataaagaaccaaagacaatcttactttgcaaatgctcaacctcaacaaaggga |
46810582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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