View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_226 (Length: 245)
Name: NF11385A_low_226
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_226 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 78988 - 79200
Alignment:
| Q |
14 |
agacctaaaaaacattgatgttacaattcagattataatcatggatggtgtattttatgtttctcaatattaaattttctgaattaacttatgcaggtgg |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
78988 |
agacctaaaaaacattgatgttacaattcagattataatcatggatggtgtattttatgtttctcaatattgaattttctgaattaacttatgcaggggg |
79087 |
T |
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| Q |
114 |
atatggaactctagaggaacttcttgaagtcataacatgggctcaacttggaattcatgacaagccggtaataattgacatgtccaattttcaggaatct |
213 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
79088 |
atatggaactctggaggaacttcttgaagtcataacatgggctcaacttggaattcatgacaagccggtaataattgacatgtccaattttcaggaatct |
79187 |
T |
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| Q |
214 |
atatcttttatgt |
226 |
Q |
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||||||||||||| |
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| T |
79188 |
atatcttttatgt |
79200 |
T |
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Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 40887296 - 40887084
Alignment:
| Q |
14 |
agacctaaaaaacattgatgttacaattcagattataatcatggatggtgtattttatgtttctcaatattaaattttctgaattaacttatgcaggtgg |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
40887296 |
agacctaaaaaacattgatgttacaattcagattataatcatggatggtgtattttatgtttctcaatattgaattttctgaattaacttatgcaggggg |
40887197 |
T |
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| Q |
114 |
atatggaactctagaggaacttcttgaagtcataacatgggctcaacttggaattcatgacaagccggtaataattgacatgtccaattttcaggaatct |
213 |
Q |
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| T |
40887196 |
atatggaactctggaggaacttcttgaagtcataacatgggctcaacttggaattcatgacaagccggtaataattgacatgtccaattttcaggaatct |
40887097 |
T |
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| Q |
214 |
atatcttttatgt |
226 |
Q |
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| T |
40887096 |
atatcttttatgt |
40887084 |
T |
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Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 104 - 185
Target Start/End: Complemental strand, 28269696 - 28269615
Alignment:
| Q |
104 |
atgcaggtggatatggaactctagaggaacttcttgaagtcataacatgggctcaacttggaattcatgacaagccggtaat |
185 |
Q |
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| T |
28269696 |
atgcaggtggttatgggactctagaggagcttcttgaagtcataacctgggctcaacttgggattcacgacaaaccggtaat |
28269615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 173
Target Start/End: Original strand, 21627833 - 21627898
Alignment:
| Q |
108 |
aggtggatatggaactctagaggaacttcttgaagtcataacatgggctcaacttggaattcatga |
173 |
Q |
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| T |
21627833 |
aggtggctatgggacacttgaggaacttcttgaggtcataacttgggctcagcttggcatccatga |
21627898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 40461775 - 40461699
Alignment:
| Q |
108 |
aggtggatatggaactctagaggaacttcttgaagtcataacatgggctcaacttggaattcatgacaagccggtaa |
184 |
Q |
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|||||| ||||| || || ||||| || ||||| || |||||||||||||||||||| || ||||| || ||||||| |
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| T |
40461775 |
aggtgggtatgggacacttgaggagctccttgaggtgataacatgggctcaacttggcatccatgataaaccggtaa |
40461699 |
T |
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