View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_227 (Length: 245)
Name: NF11385A_low_227
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_227 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 11 - 245
Target Start/End: Original strand, 44870384 - 44870633
Alignment:
| Q |
11 |
gagcatataatattaatgttcaaaatttggaagcggacacacctgtccagtgataataacttatggacagttgtggccaataaaagttcacacctaaaag |
110 |
Q |
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| T |
44870384 |
gagcatataaaattaatgttcaaaatttgtaagcgcacacacctgttcagtgataataacttatggacagttgtggccaataaaagctcacacctaaaag |
44870483 |
T |
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| Q |
111 |
attgcttcgatatatttacaaatgatggagagtaaaatgctatataa---------------aatcgttaatgattttgaatttatttccatttgatata |
195 |
Q |
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| T |
44870484 |
attgcttctatatatttacaaatgatggagagtaaaatgctatataaaatttggagttttgtaatcgttaatgattttgaatttatttccatttgatata |
44870583 |
T |
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| Q |
196 |
ggaatcagttgtggtcaggttattaatctttggcgtaacagttcttctga |
245 |
Q |
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| T |
44870584 |
ggaatcagttgtggtcaggttattaatctttggcgtaacagttcttctga |
44870633 |
T |
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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 245
Target Start/End: Original strand, 44859850 - 44859923
Alignment:
| Q |
172 |
ttgaatttatttccatttgatataggaatcagttgtggtcaggttattaatctttggcgtaacagttcttctga |
245 |
Q |
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| T |
44859850 |
ttgaatttaattccatttgatgtagaaatcagatgtggtcaaggtataaatctttggcgtaacagttcttctga |
44859923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 160
Target Start/End: Original strand, 44859745 - 44859825
Alignment:
| Q |
81 |
ttgtggccaataaaagttcacacc-taaaagattgcttcgatatatttacaaatgatggagagtaaaatgctatataaaat |
160 |
Q |
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| T |
44859745 |
ttgtggccaataaaggctcacacagtataagattgtttcaatatatttacaaataatggagagtagaatgctatataaaat |
44859825 |
T |
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