View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11385A_low_23 (Length: 434)

Name: NF11385A_low_23
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11385A_low_23
NF11385A_low_23
[»] chr3 (14 HSPs)
chr3 (7-434)||(5484450-5484875)
chr3 (189-434)||(5525676-5525919)
chr3 (265-434)||(5828158-5828327)
chr3 (247-434)||(5502897-5503082)
chr3 (266-431)||(5490101-5490266)
chr3 (257-434)||(5454915-5455092)
chr3 (267-434)||(20343545-20343712)
chr3 (318-434)||(5848887-5849003)
chr3 (271-418)||(5854204-5854351)
chr3 (247-418)||(5446346-5446517)
chr3 (317-430)||(5802494-5802607)
chr3 (131-195)||(5525588-5525652)
chr3 (9-69)||(5525497-5525557)
chr3 (7-75)||(20343322-20343390)
[»] chr6 (1 HSPs)
chr6 (247-418)||(25809295-25809466)


Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 7 - 434
Target Start/End: Original strand, 5484450 - 5484875
Alignment:
Q  7 caagtttctcgtattctttatatgatctgtagtttgaagtaaatgtcagtcaagaagcagataaagaaggaaaaaagatctatagggaaaagtgaaaaga 106  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5484450 caagtttctcgtattctttatatgatctgtaggttgaagtaaatgtcattcaagaagcagataaagaaggaaaaaagatctacagggaaaagtgaaaaga 5484549  T
Q  107 gaattattaatgccgcgtaattttatgtttttaacagtacataattcctagagattgattatttccagaagttggcatttatatgttttgtaatcttttc 206  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5484550 gaattattaatgccacgtaattttatgtttttaacagtacataattcctagagattgattatttccagaagttggcatttatatgttttgtaatcttttc 5484649  T
Q  207 ctattaattaaacagttaaggtatcagtaccagttctatcacacaaattatgaaataaataaatttgtgcaatatatctgactgaagagataaaatatgt 306  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5484650 ctattaattaaacagttaaggtatcagtaccag--ctatcacacaaatgatgaaataaataaatttgtgctatatatctgactgaagagataaaatatgt 5484747  T
Q  307 ctttggaaatgaaaatacccagttctgaagatgccagccgtatgtaaatgtcttgtcctcgatcaggatgctttctcatgtccacaatgttgccaaacca 406  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||   |||||||| |||||||||||||||||||||||||||||    
T  5484748 ctttggaaatgaaaataccaagttctgaagatgccagccgtatgtaaatttcttgtcctacgtcaggatgttttctcatgtccacaatgttgccaaacca 5484847  T
Q  407 aagtaagcagccgctcccaccatctctg 434  Q
    |||||||||||| |||||||||||||||    
T  5484848 aagtaagcagccactcccaccatctctg 5484875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 189 - 434
Target Start/End: Original strand, 5525676 - 5525919
Alignment:
Q  189 atgttttgtaatcttttcctattaattaaacagttaaggtatcagtaccagttctatcacacaaattatgaaataaataaatttgtgcaatatatctgac 288  Q
    |||||||||||||| |||||||||||||||| ||||||||| |||| ||||||||||||||||||| |||||||| ||||||  |||| |||||||| ||    
T  5525676 atgttttgtaatctattcctattaattaaactgttaaggtagcagtgccagttctatcacacaaatgatgaaatatataaat--gtgctatatatctaac 5525773  T
Q  289 tgaagagataaaatatgtctttggaaatgaaaatacccagttctgaagatgccagccgtatgtaaatgtcttgtcctcgatcaggatgctttctcatgtc 388  Q
    |||| ||  |||||||||  | |||| | |||||||| ||||||||||||||||  |||||||||||||||||||||   |||||||| |||||||||||    
T  5525774 tgaaaaggaaaaatatgtgataggaagttaaaataccaagttctgaagatgccaatcgtatgtaaatgtcttgtcctacgtcaggatgttttctcatgtc 5525873  T
Q  389 cacaatgttgccaaaccaaagtaagcagccgctcccaccatctctg 434  Q
    ||||||||||  |||||||||||||||||| |||||||||||||||    
T  5525874 cacaatgttgttaaaccaaagtaagcagccactcccaccatctctg 5525919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 265 - 434
Target Start/End: Complemental strand, 5828327 - 5828158
Alignment:
Q  265 ataaatttgtgcaatatatctgactgaagagataaaatatgtctttggaaatgaaaatacccagttctgaagatgccagccgtatgtaaatgtcttgtcc 364  Q
    |||||||||| | ||  |||| ||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||||||    
T  5828327 ataaatttgtcctatgcatctaactgaagaggtaaaatatgtctttggaaatgaaaataccaagttcggaagatgcgagtcgtatgtaaatgtcttgtcc 5828228  T
Q  365 tcgatcaggatgctttctcatgtccacaatgttgccaaaccaaagtaagcagccgctcccaccatctctg 434  Q
    |   |||||||| ||||||||||||||||| |||  |||||||||||||||||| |||||||||||||||    
T  5828227 tacgtcaggatgttttctcatgtccacaatattgttaaaccaaagtaagcagccactcccaccatctctg 5828158  T

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Target: chr3; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 247 - 434
Target Start/End: Original strand, 5502897 - 5503082
Alignment:
Q  247 acacaaattatgaaataaataaatttgtgcaatatatctgactgaagagataaaatatgtctttggaaatgaaaatacccagttctgaagatgccagccg 346  Q
    ||||||||  |||||||  ||||||| |||  ||||||| ||||||  || |||||||||  | | ||||||||||||| || |||||||||||||||||    
T  5502897 acacaaatggtgaaatatgtaaatttatgc--tatatctaactgaaaggacaaaatatgtaatagcaaatgaaaataccaagctctgaagatgccagccg 5502994  T
Q  347 tatgtaaatgtcttgtcctcgatcaggatgctttctcatgtccacaatgttgccaaaccaaagtaagcagccgctcccaccatctctg 434  Q
    ||||||||||||||||||| | || ||||| ||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||    
T  5502995 tatgtaaatgtcttgtccttggtctggatgttttctcatgtcgacaatgttgtcaaaccaaagtaagcagccactcccaccatctctg 5503082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 266 - 431
Target Start/End: Original strand, 5490101 - 5490266
Alignment:
Q  266 taaatttgtgcaatatatctgactgaagagataaaatatgtctttggaaatgaaaatacccagttctgaagatgccagccgtatgtaaatgtcttgtcct 365  Q
    ||||||| ||| |||||||| |||||| ||| |||||||||  |  |||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  5490101 taaatttatgctatatatctaactgaaaagacaaaatatgtaataagaaatgaaaataccaagttctgaagatgccatccgtatgtaaatgtcttgtcct 5490200  T
Q  366 cgatcaggatgctttctcatgtccacaatgttgccaaaccaaagtaagcagccgctcccaccatct 431  Q
     | ||  |||| |||||||||||||||||||||  ||||||||||| |||||| ||||||||||||    
T  5490201 tggtcttgatgttttctcatgtccacaatgttgttaaaccaaagtatgcagccactcccaccatct 5490266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 257 - 434
Target Start/End: Original strand, 5454915 - 5455092
Alignment:
Q  257 tgaaataaataaatttgtgcaatatatctgactgaagagataaaatatgtctttggaaatgaaaatacccagttctgaagatgccagccgtatgtaaatg 356  Q
    ||||||| |||| ||| ||| |||||||| |||||| ||| |||||||||  |  |||| ||||||||| |||||||||||||||| |||||||||||||    
T  5454915 tgaaatatataagtttatgctatatatctaactgaaaagacaaaatatgtaataagaaaagaaaataccaagttctgaagatgccatccgtatgtaaatg 5455014  T
Q  357 tcttgtcctcgatcaggatgctttctcatgtccacaatgttgccaaaccaaagtaagcagccgctcccaccatctctg 434  Q
    ||||||||| | ||  |||| |||||||||||||||||||||  ||||||||||| |||||| |||||| ||||||||    
T  5455015 tcttgtccttggtcttgatgttttctcatgtccacaatgttgtgaaaccaaagtatgcagccactcccatcatctctg 5455092  T

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Target: chr3; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 267 - 434
Target Start/End: Original strand, 20343545 - 20343712
Alignment:
Q  267 aaatttgtgcaatatatctgactgaagagataaaatatgtctttggaaatgaaaatacccagttctgaagatgccagccgtatgtaaatgtcttgtcctc 366  Q
    ||||||||||||||||||| |||| | ||  |||| ||||  | ||||||||||||||| |||||||||||||| |||||||| |||||||||||||||     
T  20343545 aaatttgtgcaatatatctaactggaaaggaaaaagatgtaataggaaatgaaaataccaagttctgaagatgctagccgtatataaatgtcttgtcctt 20343644  T
Q  367 gatcaggatgctttctcatgtccacaatgttgccaaaccaaagtaagcagccgctcccaccatctctg 434  Q
    | ||  |||| ||||||||||||| ||| ||| |||||||||||||||| || |||||||||||||||    
T  20343645 ggtctcgatgttttctcatgtccaaaatattgtcaaaccaaagtaagcaaccactcccaccatctctg 20343712  T

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Target: chr3; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 318 - 434
Target Start/End: Complemental strand, 5849003 - 5848887
Alignment:
Q  318 aaaatacccagttctgaagatgccagccgtatgtaaatgtcttgtcctcgatcaggatgctttctcatgtccacaatgttgccaaaccaaagtaagcagc 417  Q
    |||||||| |||||||||||||| || |||||||||||||||||||||   |||||||| |||||||||||||||||||||  |||||||||||||||||    
T  5849003 aaaataccgagttctgaagatgcgagtcgtatgtaaatgtcttgtcctatgtcaggatgttttctcatgtccacaatgttgttaaaccaaagtaagcagc 5848904  T
Q  418 cgctcccaccatctctg 434  Q
    | |||||||||||||||    
T  5848903 cactcccaccatctctg 5848887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 271 - 418
Target Start/End: Complemental strand, 5854351 - 5854204
Alignment:
Q  271 ttgtgcaatatatctgactgaagagataaaatatgtctttggaaatgaaaatacccagttctgaagatgccagccgtatgtaaatgtcttgtcctcgatc 370  Q
    |||||| ||||||| ||||||| ||  |||| ||||  | ||||||| ||||||| |||||||||||||||||||||||| |||||||||||||| | ||    
T  5854351 ttgtgctatatatcagactgaaaaggcaaaagatgtaataggaaatgtaaataccaagttctgaagatgccagccgtatgaaaatgtcttgtccttggtc 5854252  T
Q  371 aggatgctttctcatgtccacaatgttgccaaaccaaagtaagcagcc 418  Q
     ||||| |||||||| || ||||||||| |||||||||||||||||||    
T  5854251 tggatgttttctcatatcaacaatgttgtcaaaccaaagtaagcagcc 5854204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 247 - 418
Target Start/End: Original strand, 5446346 - 5446517
Alignment:
Q  247 acacaaattatgaaataaataaatttgtgcaatatatctgactgaagagataaaatatgtctttggaaatgaaaatacccagttctgaagatgccagccg 346  Q
    ||||||||  |||||||  ||||||| ||| |||||||| ||||||  || |||||||||  |   ||||||||||||| ||||||||||||||||||||    
T  5446346 acacaaatggtgaaatatgtaaatttatgctatatatctaactgaaaggacaaaatatgtaataacaaatgaaaataccaagttctgaagatgccagccg 5446445  T
Q  347 tatgtaaatgtcttgtcctcgatcaggatgctttctcatgtccacaatgttgccaaaccaaagtaagcagcc 418  Q
    ||||||||||||||||||| | ||  ||||  |||||||||| ||||||| | ||||||| |||||||||||    
T  5446446 tatgtaaatgtcttgtccttggtcttgatgtattctcatgtcaacaatgtcgtcaaaccagagtaagcagcc 5446517  T

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Target: chr3; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 317 - 430
Target Start/End: Complemental strand, 5802607 - 5802494
Alignment:
Q  317 gaaaatacccagttctgaagatgccagccgtatgtaaatgtcttgtcctcgatcaggatgctttctcatgtccacaatgttgccaaaccaaagtaagcag 416  Q
    ||||||||| |||||||||||||| || |||||||||||||||||||||   || ||||| ||||||||||||| ||| |||  ||||||||||||||||    
T  5802607 gaaaataccaagttctgaagatgcgagtcgtatgtaaatgtcttgtcctacgtctggatgttttctcatgtccataatattgttaaaccaaagtaagcag 5802508  T
Q  417 ccgctcccaccatc 430  Q
    || || ||||||||    
T  5802507 ccactaccaccatc 5802494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 5525588 - 5525652
Alignment:
Q  131 atgtttttaacagtacataattcctagagattgattatttccagaagttggcatttatatgtttt 195  Q
    ||||||| ||| ||||  ||||||||||| |||||||||| ||||||||||||||||| ||||||    
T  5525588 atgttttgaacggtactcaattcctagaggttgattattttcagaagttggcatttatgtgtttt 5525652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 5525497 - 5525557
Alignment:
Q  9 agtttctcgtattctttatatgatctgtagtttgaagtaaatgtcagtcaagaagcagata 69  Q
    |||| ||| |||||||| |||||||||  | |||||||||||||||||||| |||||||||    
T  5525497 agttcctcttattctttttatgatctgatggttgaagtaaatgtcagtcaacaagcagata 5525557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 20343322 - 20343390
Alignment:
Q  7 caagtttctcgtattctttatatgatctgtagtttgaagtaaatgtcagtcaagaagcagataaagaag 75  Q
    |||||| ||| |||||||| |||||||||  | ||||| |||||||||||||| |||||| || |||||    
T  20343322 caagttcctcttattctttttatgatctgagggttgaaataaatgtcagtcaacaagcaggtatagaag 20343390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 247 - 418
Target Start/End: Complemental strand, 25809466 - 25809295
Alignment:
Q  247 acacaaattatgaaataaataaatttgtgcaatatatctgactgaagagataaaatatgtctttggaaatgaaaatacccagttctgaagatgccagccg 346  Q
    ||||||||  |||||||  ||||||| ||| |||||||| ||||||  || |||||||||  |   ||||||||||||| ||||||||||||||||||||    
T  25809466 acacaaatggtgaaatatgtaaatttatgctatatatctaactgaaaggacaaaatatgtaataacaaatgaaaataccaagttctgaagatgccagccg 25809367  T
Q  347 tatgtaaatgtcttgtcctcgatcaggatgctttctcatgtccacaatgttgccaaaccaaagtaagcagcc 418  Q
    ||||||||||||||||||| | ||  ||||  |||||||||| ||||||| | ||||||| |||||||||||    
T  25809366 tatgtaaatgtcttgtccttggtcttgatgtattctcatgtcaacaatgtcgtcaaaccagagtaagcagcc 25809295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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