View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_234 (Length: 244)
Name: NF11385A_low_234
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_234 |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 4876542 - 4876684
Alignment:
| Q |
1 |
ggcaccaagcaacactaaaacaaaatgcaataagatttccatcattgtttgcttcattaggaatataattaatgaatgatgagtgttaatgctatacaac |
100 |
Q |
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| T |
4876542 |
ggcaccaagcaacactaaaacaaaatgcaaaaagatttccatcattgtttgcttcattaggaatataattaatgaatgatcagtgttaatgctatacaac |
4876641 |
T |
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| Q |
101 |
gcagcatttataccgctagagagtcaaatttgcttcaatttac |
143 |
Q |
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| T |
4876642 |
gcagcatttataccgctagagagtcaaatttgcttcaatttac |
4876684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 4680243 - 4680191
Alignment:
| Q |
48 |
tttgcttcattaggaatata--attaatgaatgatgagtgttaatgctataca |
98 |
Q |
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| T |
4680243 |
tttgcttcattaggaatatacaattaatgaatgatgagtgctaatgctataca |
4680191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 124
Target Start/End: Original strand, 4926425 - 4926546
Alignment:
| Q |
3 |
caccaagcaacactaaaacaaaatgcaataagatttccatcattgtttgcttcattaggaatataattaatgaatgatgagtgttaatgctatacaacgc |
102 |
Q |
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| T |
4926425 |
caccaagcaatgctaaaagaaaattcagtaacattctcattattgtttgcttcattagggatacaatttatgaatgatgaatactaatactatgcaagga |
4926524 |
T |
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| Q |
103 |
agcatttataccgctagagagt |
124 |
Q |
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| T |
4926525 |
agcatatatactgctagagagt |
4926546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 113
Target Start/End: Complemental strand, 10445468 - 10445377
Alignment:
| Q |
22 |
aaaatgcaataagatttccatcattgtttgcttcattaggaatataattaatgaatgatgagtgttaatgctatacaacgcagcatttatac |
113 |
Q |
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| T |
10445468 |
aaaatgcagtaacattctcatcattgtttgtttcattagggatacaattatggactgataagtgttaattctatacaaggaagcatttatac |
10445377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 4725171 - 4725135
Alignment:
| Q |
39 |
ccatcattgtttgcttcattaggaatataattaatga |
75 |
Q |
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| T |
4725171 |
ccatcattgtttgcttcattaggaatactattaatga |
4725135 |
T |
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