View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_236 (Length: 244)
Name: NF11385A_low_236
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_236 |
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Alignment Details
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 48205383 - 48205229
Alignment:
| Q |
8 |
aatgtgttggaaataaagtaaaagtatagggtaactaa----tgtggggagttaacttaatattatttacaagatttgaggttttttcataatatttttt |
103 |
Q |
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| T |
48205383 |
aatgtgttggaaataaagtaaaagtatagggtaactaactaatgtggggagttaacttaatattatttacaagatttgaggttttttcataatatttttt |
48205284 |
T |
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| Q |
104 |
gcaaaataagttaataagtgtcatcaattacataatttagcttcaatttggcacttattatg |
165 |
Q |
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| T |
48205283 |
gcaaa-------aataagtgtcatcaattatataatttagcttcaatttggcacttattatg |
48205229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 48205044 - 48204963
Alignment:
| Q |
157 |
cttattatgtgacaaaagtgcgttagagtatttctaatgacaagtttataaggaacttgaatttgcttccataactaatatt |
238 |
Q |
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| T |
48205044 |
cttattatgtgacaaaagtgcgttagagcatttctaatgacaagtttataaggaacttgaatttgcttccataactaatatt |
48204963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 35724976 - 35725026
Alignment:
| Q |
86 |
tttttcataatattttttgcaaaataagttaataagtgtcatcaattacat |
136 |
Q |
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| T |
35724976 |
tttttcatatgatttcttgcaaaataagttaataagtgccatcaattacat |
35725026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 21842868 - 21842828
Alignment:
| Q |
97 |
attttttgcaaaataagttaataagtgtcatcaattacata |
137 |
Q |
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| T |
21842868 |
atttcttgcaaaataagttaataagtgccatgaattacata |
21842828 |
T |
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