View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_237 (Length: 244)
Name: NF11385A_low_237
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_237 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 55173887 - 55174102
Alignment:
| Q |
20 |
ggtccaaccctgagggtcacgttcagtccttttgattgaacaagcctaatgaacttcaccaaatcattgttgccttcaaagttgaactgcataacgtttg |
119 |
Q |
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| T |
55173887 |
ggtccaaccctgagggtcacgtacattccttttgattgaacaagcctaatgaacttcaccaaatcattgttgccttcaaaattgaactgcataacgtttg |
55173986 |
T |
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| Q |
120 |
ataaacaaattaagtttacaatcaaatgttccatacattgagtcaagagattaattttgtcatttaattaatcatataccttgccttgctctggctcatg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55173987 |
ataaacaaattaagtttacaatcaaatgttccatacattgagtcaagagattaattttgtcatttaattaatcatataccttgccttgctctggctcatg |
55174086 |
T |
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| Q |
220 |
agcgttccaaaacacg |
235 |
Q |
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| T |
55174087 |
agcgttccaaaacacg |
55174102 |
T |
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