View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11385A_low_24 (Length: 432)

Name: NF11385A_low_24
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11385A_low_24
NF11385A_low_24
[»] chr4 (1 HSPs)
chr4 (22-432)||(26572833-26573258)
[»] chr2 (18 HSPs)
chr2 (94-390)||(10377975-10378287)
chr2 (77-232)||(10350221-10350382)
chr2 (106-209)||(10345736-10345839)
chr2 (92-209)||(10339246-10339363)
chr2 (92-226)||(10369915-10370049)
chr2 (94-293)||(10342064-10342278)
chr2 (19-95)||(10350473-10350549)
chr2 (19-87)||(10339536-10339604)
chr2 (273-429)||(10369683-10369832)
chr2 (237-293)||(10363499-10363555)
chr2 (22-95)||(10370211-10370282)
chr2 (334-429)||(10339134-10339228)
chr2 (369-420)||(10363348-10363399)
chr2 (23-96)||(10346004-10346076)
chr2 (94-150)||(10363609-10363665)
chr2 (369-403)||(10350132-10350166)
chr2 (170-204)||(10363579-10363613)
chr2 (237-293)||(10368772-10368828)


Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 22 - 432
Target Start/End: Complemental strand, 26573258 - 26572833
Alignment:
Q  22 atttgatgtagcacttacttgcgggtgttgaaacttcaaagttatatttagttggtctcgtaaaaagatccttttgaactgtgtatgcaaaagcttgaag 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26573258 atttgatgtagcacttacttgcgggtgttgaaacttcaaagttatatttagttggtctcgtaaaaagatccttttgaactgtgtatgcaaaagcttgaag 26573159  T
Q  122 aagagaaagaaatcattcttaaacaaatttcagagaatgtgaaagaaaaaattgatgaaggattgcagaactaagaactttagggctcaaccatgcataa 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26573158 aagagaaagaaatcattcttaaacaaatttcagagaatgtgaaagaaaaaattgatgaaggattgcagaactaagaactttagggctcaaccatgcataa 26573059  T
Q  222 aaggttaaact---------------attatgttatcaacagataaatgttagagaaaatttatttcatatcttcagtgtttgtatgtcaatttgcagaa 306  Q
    |||||||||||               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  26573058 aaggttaaactcatactgttttggtgattatgttatcaacagataaatgttagagaaaatttatttcatatcttcagtgtttgtatgtcaatttgcagag 26572959  T
Q  307 cacattttccttttagtcgaggttttcttttttgtttggaattgattgaatnnnnnnngttgattattctgaatatatgatacacttcatgtagtaatcc 406  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  26572958 cacattttccttttaggcgaggctttcttttttgtttggaattgattgaataaaaaaagttgattattctgaatatatgatacacttcatgtagtaatcc 26572859  T
Q  407 taactaaactaacaaattttaaccaa 432  Q
    ||||||||||||||||| ||||||||    
T  26572858 taactaaactaacaaatgttaaccaa 26572833  T

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Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 94 - 390
Target Start/End: Complemental strand, 10378287 - 10377975
Alignment:
Q  94 tttgaactgtgtatgcaaaagcttgaagaagagaaagaaatcattcttaaacaaatttcagagaatgtgaaagaaaaaattgatgaaggattgcagaact 193  Q
    ||||||| |||||||||||||||||||| |||| |||||| |||||| |||||||||  |||||||||| ||||| |||||||||||||| |||||||||    
T  10378287 tttgaacagtgtatgcaaaagcttgaagcagaggaagaaaacattctgaaacaaattctagagaatgtggaagaagaaattgatgaaggaatgcagaact 10378188  T
Q  194 aagaactttagggctcaaccat--gcataaaaggttaaact---------------attatgttatcaacagataaatgttagagaaaatttatttcata 276  Q
    |||| ||||||  ||| |||||  ||||||||||| |||||               ||| ||||| |||||||| |||||||||||||||||||||||||    
T  10378187 aagacctttagtactctaccatatgcataaaaggtcaaactcatacttttttggtgattttgttagcaacagatgaatgttagagaaaatttatttcata 10378088  T
Q  277 tcttcagtgtttgtatgtcaatttgcagaacacattttccttttagtcgaggttttcttttttgtttggaattgattgaatnnnnnnngttgattattct 376  Q
    |||||||||||||||||| |||||||||  ||||||||||||||||  | ||||||  ||||||||||||||||||| |||       ||||||||||||    
T  10378087 tcttcagtgtttgtatgtgaatttgcagtgcacattttccttttaggtg-ggtttttctttttgtttggaattgattaaataaaaaaagttgattattct 10377989  T
Q  377 gaatatatgataca 390  Q
     ||||||| |||||    
T  10377988 taatatattataca 10377975  T

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Target: chr2; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 77 - 232
Target Start/End: Complemental strand, 10350382 - 10350221
Alignment:
Q  77 tctcgtaaaaagatccttttgaactgtgtatgcaaaagcttgaagaaga----gaa--agaaatcattcttaaacaaatttcagagaatgtgaaagaaaa 170  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||    |||  ||||| |||||||||  |||||||||||||||||| ||||||    
T  10350382 tctcgtaaaaagatcctttcgaactgtgtatgcaaaaacttgaagaagaagaagaagaagaaaacattcttaagaaaatttcagagaatgtgacagaaaa 10350283  T
Q  171 aattgatgaaggattgcagaactaagaactttagggctcaaccatgcataaaaggttaaact 232  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10350282 aattgatgaaggaatgcagaactaagaactttagggctcaaccatgcataaaaggttaaact 10350221  T

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Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 106 - 209
Target Start/End: Complemental strand, 10345839 - 10345736
Alignment:
Q  106 atgcaaaagcttgaagaagagaaagaaatcattcttaaacaaatttcagagaatgtgaaagaaaaaattgatgaaggattgcagaactaagaactttagg 205  Q
    ||||||||||||||||||||| |||||| |||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  10345839 atgcaaaagcttgaagaagaggaagaaaacattcttaagaaaatttcagagaatgtgaaagaaaaaattgatgaaggaatgcagaactaagaacttcagg 10345740  T
Q  206 gctc 209  Q
    ||||    
T  10345739 gctc 10345736  T

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Target: chr2; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 92 - 209
Target Start/End: Complemental strand, 10339363 - 10339246
Alignment:
Q  92 cttttgaactgtgtatgcaaaagcttgaagaagagaaagaaatcattcttaaacaaatttcagagaatgtgaaagaaaaaattgatgaaggattgcagaa 191  Q
    ||||||||| ||||||||||||||||||||||||| |||||| |||||| |||||||||  |||||||||| ||||| |||||||||||||| |||||||    
T  10339363 cttttgaacagtgtatgcaaaagcttgaagaagaggaagaaaacattctgaaacaaattctagagaatgtggaagaagaaattgatgaaggaatgcagaa 10339264  T
Q  192 ctaagaactttagggctc 209  Q
    | ||||||||||| ||||    
T  10339263 ccaagaactttagtgctc 10339246  T

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Target: chr2; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 92 - 226
Target Start/End: Complemental strand, 10370049 - 10369915
Alignment:
Q  92 cttttgaactgtgtatgcaaaagcttgaagaagagaaagaaatcattcttaaacaaatttcagagaatgtgaaagaaaaaattgatgaaggattgcagaa 191  Q
    ||||||||| ||||||||||||| ||||||||||| |||| | | |||| ||| |||||  |||||||||| ||||| |||||||||||||| |||||||    
T  10370049 cttttgaacagtgtatgcaaaagtttgaagaagaggaagagaacgttctgaaagaaattctagagaatgtggaagaagaaattgatgaaggaatgcagaa 10369950  T
Q  192 ctaagaactttagggctcaaccatgcataaaaggt 226  Q
    |||||||||| || |||| ||||||||||||||||    
T  10369949 ctaagaacttaagtgctccaccatgcataaaaggt 10369915  T

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Target: chr2; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 94 - 293
Target Start/End: Complemental strand, 10342278 - 10342064
Alignment:
Q  94 tttgaactgtgtatgcaaaagcttgaagaagagaaagaaatcattcttaaacaaatttcagagaatgtgaaagaaaaaattgatgaaggattgcagaact 193  Q
    ||||||| |||||||| ||||||||||| |||  |||||| | |||| |||||||||   ||||||||| ||||| ||||||||||||||  | ||||||    
T  10342278 tttgaacagtgtatgcgaaagcttgaagcagatgaagaaaacgttctgaaacaaattcttgagaatgtggaagaagaaattgatgaaggaaagtagaact 10342179  T
Q  194 aagaactttagggctcaaccatgcataaaaggttaaact---------------attatgttatcaacagataaatgttagagaaaatttatttcatatc 278  Q
    ||| | |||||  ||  |||||||||||| |||||||||               ||| ||||| ||||||||||||||||||||||||||||||||||||    
T  10342178 aagtattttagtactttaccatgcataaatggttaaactcatacttttttggtgattttgttaacaacagataaatgttagagaaaatttatttcatatc 10342079  T
Q  279 ttcagtgtttgtatg 293  Q
    |||||||||||||||    
T  10342078 ttcagtgtttgtatg 10342064  T

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Target: chr2; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 10350549 - 10350473
Alignment:
Q  19 atcatttgatgtagcacttacttgcgggtgttgaaacttcaaagttatatttagttggtctcgtaaaaagatccttt 95  Q
    ||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||| ||||||||||||||    
T  10350549 atcatttgatgtagcacttacttgcgggtgttgaaacttcatagataaatttagttggtctcataaaaagatccttt 10350473  T

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Target: chr2; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 10339604 - 10339536
Alignment:
Q  19 atcatttgatgtagcacttacttgcgggtgttgaaacttcaaagttatatttagttggtctcgtaaaaa 87  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| |||||| | ||||||||||||    
T  10339604 atcatttgatgtagcacttacttgcgggtgttgaaactttaaagttaaatttaggtagtctcgtaaaaa 10339536  T

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Target: chr2; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 273 - 429
Target Start/End: Complemental strand, 10369832 - 10369683
Alignment:
Q  273 catatcttcagtgtttgtatgtcaatttgcagaacacattttccttttagtcgaggttttcttttttgtttggaattgattgaatnnnnnnngttgatta 372  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||| | ||   ||| ||||||||||  ||||||||||||        |||||||    
T  10369832 catatcttcagtgtttgtatgtgaatttgcagagcacattttccttttaattga--attttttttttgtttataattgattgaatagaaaattttgatta 10369735  T
Q  373 ttctgaatatatgatacacttcatgtagtaatcctaactaaactaacaaattttaac 429  Q
    |||||||||||| ||||||     |||||| ||||||||| ||||| ||||||||||    
T  10369734 ttctgaatatatcatacac-----gtagtagtcctaactatactaataaattttaac 10369683  T

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Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 10363555 - 10363499
Alignment:
Q  237 tgttatcaacagataaatgttagagaaaatttatttcatatcttcagtgtttgtatg 293  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  10363555 tgttaacaagagataaatgttagagaaaatttatttcatatcttcggtgtttgtatg 10363499  T

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Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 10370282 - 10370211
Alignment:
Q  22 atttgatgtagcacttacttgcgggtgttgaaacttcaaagttatatttagttggtctcgtaaaaagatccttt 95  Q
    ||||||||||||||||||||   |||||||||| || ||||||| |||||||||||||| ||||||||||||||    
T  10370282 atttgatgtagcacttactta--ggtgttgaaaatttaaagttaaatttagttggtctcataaaaagatccttt 10370211  T

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Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 334 - 429
Target Start/End: Complemental strand, 10339228 - 10339134
Alignment:
Q  334 ttttttgtttggaattgattgaatnnnnnnngttgattattctgaatatatgatacacttcatgtagtaatcctaactaaactaacaaattttaac 429  Q
    |||||| |||||||||||||||||       ||||||||||||||||||| ||||||| | |||||||||||||||| || ||| |||||||||||    
T  10339228 ttttttttttggaattgattgaataaaaaa-gttgattattctgaatataggatacacattatgtagtaatcctaaccaagctatcaaattttaac 10339134  T

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Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 420
Target Start/End: Complemental strand, 10363399 - 10363348
Alignment:
Q  369 attattctgaatatatgatacacttcatgtagtaatcctaactaaactaaca 420  Q
    ||||||||||||||||| ||||||| ||||||||| ||||||||||||||||    
T  10363399 attattctgaatatatggtacactttatgtagtaaccctaactaaactaaca 10363348  T

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Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 10346076 - 10346004
Alignment:
Q  23 tttgatgtagcacttacttgcgggtgttgaaacttcaaagttatatttagttggtctcgtaaaaagatcctttt 96  Q
    ||||||||||||||| |||||| |||||||||| | ||||||| |||||| |||| || |||||||||||||||    
T  10346076 tttgatgtagcactttcttgcgagtgttgaaaccttaaagttaaatttag-tggtatcataaaaagatcctttt 10346004  T

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Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 10363665 - 10363609
Alignment:
Q  94 tttgaactgtgtatgcaaaagcttgaagaagagaaagaaatcattcttaaacaaatt 150  Q
    ||||||| |||||||||||||||||||| |||  |||||| |||||| |||||||||    
T  10363665 tttgaacagtgtatgcaaaagcttgaagcagatgaagaaaacattctgaaacaaatt 10363609  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 403
Target Start/End: Complemental strand, 10350166 - 10350132
Alignment:
Q  369 attattctgaatatatgatacacttcatgtagtaa 403  Q
    ||||||||| |||||||||||||||||||||||||    
T  10350166 attattctggatatatgatacacttcatgtagtaa 10350132  T

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Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 204
Target Start/End: Complemental strand, 10363613 - 10363579
Alignment:
Q  170 aaattgatgaaggattgcagaactaagaactttag 204  Q
    |||||||||||||| ||||||||||||||||||||    
T  10363613 aaattgatgaaggaatgcagaactaagaactttag 10363579  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 10368828 - 10368772
Alignment:
Q  237 tgttatcaacagataaatgttagagaaaatttatttcatatcttcagtgtttgtatg 293  Q
    ||||| ||| ||||||||||| |||||||||| ||||| ||||||| || |||||||    
T  10368828 tgttaacaaaagataaatgttggagaaaatttgtttcacatcttcactgattgtatg 10368772  T

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