View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_246 (Length: 242)
Name: NF11385A_low_246
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_246 |
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Alignment Details
Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 103 - 232
Target Start/End: Complemental strand, 13244241 - 13244112
Alignment:
| Q |
103 |
tcccaatccgtctttcattagttcttttagcaggcaataacgagattcatctacatcttcatttcctttgtactcagttatacatttgtccaagaagtgg |
202 |
Q |
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| T |
13244241 |
tcccaatctttccttcattagttcttttagcaggcaataacgagattcatctacatcttcatttcctttgtaatcagttatacatttctccaagaattgg |
13244142 |
T |
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| Q |
203 |
tgaagattttcttttgctgccttgcccttc |
232 |
Q |
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| T |
13244141 |
tgaagattttctctagctgccttgcccttc |
13244112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 13244506 - 13244452
Alignment:
| Q |
32 |
gaggaaattgcctgaaggtttcacatatggctccatgaaggtaaacaagcttatc |
86 |
Q |
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| T |
13244506 |
gaggatatagcctcaaggtttcacatatggctccatgaaggtaaacaagcttatc |
13244452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 13080881 - 13080790
Alignment:
| Q |
1 |
ttgatagcacgcttgagctgaaagtgcagcaga-ggaaattgcctgaaggtttcacatatggctccatgaaggtaaacaagcttatccagctc |
92 |
Q |
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| T |
13080881 |
ttgatagcacacttgtgctgaaa-tgctacagaaggatatagccttaaggcttcacatatggctccatgaaggtaaactagcttatcaagctc |
13080790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 167
Target Start/End: Complemental strand, 19278891 - 19278827
Alignment:
| Q |
103 |
tcccaatccgtctttcattagttcttttagcaggcaataacgagattcatctacatcttcatttc |
167 |
Q |
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| T |
19278891 |
tcccaatctttccttcattagttcttttaccaggcaataatgagattcatccgcgtcttcatttc |
19278827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 162
Target Start/End: Complemental strand, 12963634 - 12963575
Alignment:
| Q |
103 |
tcccaatccgtctttcattagttcttttagcaggcaataacgagattcatctacatcttc |
162 |
Q |
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| T |
12963634 |
tcccaatccttccttcattagatcttttagcaggcaagaatgagattcatccacgtcttc |
12963575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 232
Target Start/End: Complemental strand, 19278809 - 19278735
Alignment:
| Q |
158 |
tcttcatttcctttgtactcagttatacatttgtccaagaagtggtgaagattttcttttgctgccttgcccttc |
232 |
Q |
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| T |
19278809 |
tcttcatcacctttgtaataagatatacatttgttcaagaattcgtgaagattttctttagctaccgtgcccttc |
19278735 |
T |
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