View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_249 (Length: 242)
Name: NF11385A_low_249
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_249 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 22421756 - 22421542
Alignment:
| Q |
7 |
ttggagttgctgtttgtgatgatgaggataatttgatattggaaatttctaaggctgttgttgggaatgaaagtaggaaaattgttgtggagcttatggc |
106 |
Q |
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| T |
22421756 |
ttggtgttgctgtttgtgatgatgaggataatttgatattggaaatttctaagactgttgatgggaatgagagtcgtaaaattgctgtggagcttatggc |
22421657 |
T |
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| Q |
107 |
tttgattgaaagtttcaatgctgttattgctttggatttgaagcgtgttctttattttggtgattattatacactttttcaacatgtgagttcttcttac |
206 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22421656 |
tttgattgaaggtttcaatgctgttattgctttggatttgaagcgtgttatttattttggtgattattatacactttttcaacatgtgagttcttcttac |
22421557 |
T |
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| Q |
207 |
tctctctaaatggtt |
221 |
Q |
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||||||||||||||| |
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| T |
22421556 |
tctctctaaatggtt |
22421542 |
T |
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