View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_25 (Length: 428)
Name: NF11385A_low_25
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 26872110 - 26871821
Alignment:
| Q |
19 |
ttactgtggtagcctaaagagaaaaatgtttctccttcacttttcttagtctcttacattcactactgtccaagagtagttcttaacaaaccatgttata |
118 |
Q |
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| T |
26872110 |
ttactgtggtagcctaaagagaaaaatgtttctccttcacttttcttagtctcttacattcactactgtccaagagtagttcttaacaaaccatgttata |
26872011 |
T |
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| Q |
119 |
tttctaaatgatatcacttcaagttctctaaatgcaatatctgctacctgcacccttttcttcactaagctagatttgtgtgagcgtgtgtagtgtgtgt |
218 |
Q |
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| T |
26872010 |
tttccaaatgatatcacttcaagttgtctaaatgcaatatctgctacctgcacccttttcttcact-cgatagatttgtgtgagcgtgtgtagtgtgtgt |
26871912 |
T |
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| Q |
219 |
aatttccacatacctgaatatgtaatgatgcatgtatcgatttttaacagatatgattttcttctgtagatagatttgtgtgagcgtgtgt |
309 |
Q |
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| T |
26871911 |
aatttccacgtacctgaatatgtaatgatgcatgtatctatttttaacagatatgattttcttctgtagatagatttgtgtgagcgtgtgt |
26871821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 213 - 275
Target Start/End: Complemental strand, 26871826 - 26871764
Alignment:
| Q |
213 |
gtgtgtaatttccacatacctgaatatgtaatgatgcatgtatcgatttttaacagatatgat |
275 |
Q |
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| T |
26871826 |
gtgtgtaatttccacgtacctgagtatgtaatgatgcatgtatctatttttaacagatatgat |
26871764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 319 - 424
Target Start/End: Complemental strand, 41660034 - 41659940
Alignment:
| Q |
319 |
ttattaatttgtgattgtgtccataaaatatttctcctcggaagccacacttataattcactttactcttccccctgtttctatacgttgacagtggttg |
418 |
Q |
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| T |
41660034 |
ttattaatttgtgattgtgtccataaaatatttctcctcggaagccac-----------actttactcttccctctgtttctatacgttgacagtggttg |
41659946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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