View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_253 (Length: 240)
Name: NF11385A_low_253
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_253 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 27491926 - 27492130
Alignment:
| Q |
17 |
atgagcatgtgtgtgtttggttatgtatgtgacacaaaccaannnnnnnaatgaattcattttgtaaaattggttgtgcttaaagtgatgtgtgcttcat |
116 |
Q |
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| T |
27491926 |
atgagcatgtgtgtgtttggt-atgtatgtgacacaaaccaatttttttaatgaattcattttgtaaaattggttgtgcttaaagtgatgtgtgcttcat |
27492024 |
T |
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| Q |
117 |
tttctagtgataataaatgttttgagtgaattaactttttgaaattgagtaccattaaaaat-aattgaatataaagtgatttatattttaatgtgtgat |
215 |
Q |
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| T |
27492025 |
tttctagtgataataaatgttttgagtgaattaactttttgaaattgagtacgattaaaaatgaatttaatatgaagtgatttatgttttaatgtgtgat |
27492124 |
T |
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| Q |
216 |
atttat |
221 |
Q |
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|||||| |
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| T |
27492125 |
atttat |
27492130 |
T |
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