View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_256 (Length: 239)
Name: NF11385A_low_256
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_256 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 40207310 - 40207548
Alignment:
| Q |
1 |
cgtcccacaaatagcccaaaggtcacagccggattaatgtgtcctcctacaattatttaatattaccaaattaattaatttcaatttaaaatatacatac |
100 |
Q |
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| T |
40207310 |
cgtcccacaaatagcccaaaggtcacagccggattaatgtgtcctcctacaattatttaatattaccaaattaattaatttcaattaaaaatatacatac |
40207409 |
T |
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| Q |
101 |
acaacacaacacaagttttgagaataagtccaattttgacttatgtaaccaatgttcgcaattgaacattatttttcaattaattttctttttaagttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40207410 |
acaacacaacacaagttttgagaataagtccaattttgacttatgtaaccaatgtttgcaattgcacattatttttcaattaattttctttttaagttgt |
40207509 |
T |
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| Q |
201 |
ataaaaagttaagagtgaaaaacaaacgaacaatctctg |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
40207510 |
ataaaaagttaagagtgaaaaacaaacgaacaatctctg |
40207548 |
T |
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