View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11385A_low_259 (Length: 238)
Name: NF11385A_low_259
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_259 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 7 - 238
Target Start/End: Complemental strand, 49166116 - 49165885
Alignment:
| Q |
7 |
acatcaagcacaacatcttccttgttggcaagcacaaaaacacatacatctccagcctgcaatttattttcttctacaaacagactccaaccttcaccca |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49166116 |
acatcaagcacaacatcttccttgttggcaagcacaaaaacacatacatctccagcctgcaatttattttcttctacaaacagactccaaccttcaccca |
49166017 |
T |
|
| Q |
107 |
actttgttgctggttcggatggataatacatcaattgtacaggccacaatttttcctcaaactgtaacattgcagtcttctttttgggacccaagtactt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49166016 |
actttgttgctggttcggatggataatacatcaattgtacaggccacaatttttcctcaaactgtaacattgcagtcttctttttgggacccaagtactt |
49165917 |
T |
|
| Q |
207 |
gctcgagaatgaatttcgtacacgctgcgcaa |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
49165916 |
gctcgagaatgaatttcgtacacgctgcgcaa |
49165885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 43752543 - 43752422
Alignment:
| Q |
8 |
catcaagcacaacatcttccttgttggcaagcacaaaaacacatacatctccagcctgcaatttattttcttctacaaacagactccaaccttcacccaa |
107 |
Q |
| |
|
|||||| ||||| ||||||||| ||| | ||| |||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||| || ||| |
|
|
| T |
43752543 |
catcaaacacaagatcttccttattgacgagctcaaaaacacatacatctccagcctccaatttattttcctctacaaacttactccaacctgtactcaa |
43752444 |
T |
|
| Q |
108 |
ctttgttgctggttcggatgga |
129 |
Q |
| |
|
||| |||| |||||||||||| |
|
|
| T |
43752443 |
cttggttgacggttcggatgga |
43752422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University