View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_260 (Length: 237)
Name: NF11385A_low_260
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_260 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 21 - 218
Target Start/End: Original strand, 17433047 - 17433245
Alignment:
| Q |
21 |
aaagtcgatttggtagtaggatcacaaataaaatatgacaagtttagagaaagttatcgtcggattcaatttggataacatcccatctaatgtttccact |
120 |
Q |
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| T |
17433047 |
aaagtcgatttggtagtaggatcacaaataaaatatgacaagtttagagaaagttatcgtcggattcaatttggataacatcccatctaatgtttccact |
17433146 |
T |
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| Q |
121 |
taatcaattgcatac-nnnnnnnncttcaaatataactccactcatcccttggcacacatctccattcctggatgatgatgcaagatccattaaaccaa |
218 |
Q |
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| T |
17433147 |
taatcaattgcatacttttttttccttcaaatataactccactcatcccttggcacacatctccattcctggatgatgatgcaaaatccattaaaccaa |
17433245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 16550762 - 16550808
Alignment:
| Q |
29 |
tttggtagtaggatcacaaataaaatatgacaagtttagagaaagtt |
75 |
Q |
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| T |
16550762 |
tttggtagcaggatcgcaagtaaaatatgacaagtttagagaaagtt |
16550808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 13002166 - 13002211
Alignment:
| Q |
29 |
tttggtagtaggatcacaaataaaatatgacaagtttagagaaagtt |
75 |
Q |
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| T |
13002166 |
tttggtagtaggatcacaagtaaaatatgataagttt-gagaaagtt |
13002211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 13076824 - 13076869
Alignment:
| Q |
29 |
tttggtagtaggatcacaaataaaatatgacaagtttagagaaagtt |
75 |
Q |
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| T |
13076824 |
tttggtagtaggatcacaagtaaaatatgataagttt-gagaaagtt |
13076869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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