View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11385A_low_262 (Length: 236)
Name: NF11385A_low_262
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_262 |
 | |
|
| [»] scaffold0111 (1 HSPs) |
| | |
|
| [»] scaffold0093 (1 HSPs) |
| | |
|
| [»] scaffold0417 (1 HSPs) |
| | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
| [»] scaffold1114 (1 HSPs) |
| | |
|
| [»] scaffold0184 (1 HSPs) |
| | |
|
| [»] scaffold0039 (1 HSPs) |
| | |
|
| [»] scaffold0115 (1 HSPs) |
| | |
|
| [»] scaffold0530 (1 HSPs) |
| | |
|
| [»] scaffold0412 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0111 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0111
Description:
Target: scaffold0111; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 39 - 220
Target Start/End: Original strand, 30221 - 30406
Alignment:
| Q |
39 |
gtaattatgg-tatgttaaacttcatggatttgatgtgtttatgtgcttaaattcatatttgttgatg---ataagttgttttggtgattttttcttatt |
134 |
Q |
| |
|
|||||||||| ||||||||||||||| || ||||| |||||||||||||||||||||| |||||| || ||||||||||||| |||||||| |||||| |
|
|
| T |
30221 |
gtaattatggctatgttaaacttcatagaattgatatgtttatgtgcttaaattcatagttgttgttggtgataagttgttttgatgatttttgcttatt |
30320 |
T |
|
| Q |
135 |
taagtgtaaaccatgaattgatgagtgattattgttggtacatgtttaaatttacttcgtaaatgtttatacatgtttatatgttg |
220 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||| || ||||||||||||| ||||| |||||| ||||| ||||| ||||||| |
|
|
| T |
30321 |
taagtgtaaatcatgaattgatgagtgattgttgtcggaacatgtttaaattcacttcataaatgattatatatgttggtatgttg |
30406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 47 - 220
Target Start/End: Complemental strand, 25263405 - 25263229
Alignment:
| Q |
47 |
ggtatgttaaacttcatggatttgatgtgtttatgtgcttaaattcatatttgtt---gatgataagttgttttggtgattttttcttatttaagtgtaa |
143 |
Q |
| |
|
||||||||||||||| |||| ||||| |||| ||||||||||||||||| ||||| | |||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
25263405 |
ggtatgttaaacttcttggaattgatatgttaatgtgcttaaattcatagttgttattggtgataagttgttttggtgatttttgcttaattaagtgtaa |
25263306 |
T |
|
| Q |
144 |
accatgaattgatgagtgattattgttggtacatgtttaaatttacttcgtaaatgtttatacatgtttatatgttg |
220 |
Q |
| |
|
||| | || |||||||||||||||||||| ||||||||||||| ||||| |||||| ||||| |||||| ||||||| |
|
|
| T |
25263305 |
acccttaaatgatgagtgattattgttggaacatgtttaaattcacttcataaatgattatatatgtttgtatgttg |
25263229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 223
Target Start/End: Complemental strand, 21695234 - 21695046
Alignment:
| Q |
40 |
taattatgg-tatgttaaacttcatggatttgatgtgtttatgtgcttaaa-ttcatatttg---ttgatgataagttgttttgg-tgattttttcttat |
133 |
Q |
| |
|
||||||||| ||||||||||||||| |||||| | || ||||||||||| |||||| ||| ||| |||||||||||||| | |||||||| ||||| |
|
|
| T |
21695234 |
taattatggatatgttaaacttcatcaatttgacatatt-atgtgcttaaacttcatagttgatgttgttgataagttgtttttgatgatttttacttat |
21695136 |
T |
|
| Q |
134 |
ttaagtgtaaaccatgaattgatgagtgattattgttggtacatgtttaaatttacttcgtaaatgtttatacatgtttatatgttgatg |
223 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||| ||||||||||||| ||||| |||||||| |||| || || |||||||||| |
|
|
| T |
21695135 |
ttaagtgtaaatcatcaattgatgagtgattattgttgaaacatgtttaaattcacttcataaatgttaatacctgattgtatgttgatg |
21695046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 220
Target Start/End: Original strand, 18830728 - 18830838
Alignment:
| Q |
109 |
agttgttttggtgattttttcttatttaagtgtaaaccatgaattgatgagtgattattgttggtacatgtttaaatttacttcgtaaatgtttatacat |
208 |
Q |
| |
|
|||||||||| ||||||||| ||||| | || ||| |||||||||||| ||||| |||||| |||||||| |||| ||||| || |||||| | || |
|
|
| T |
18830728 |
agttgttttgatgattttttactatttgactg-aaatcatgaattgatgtatgattgttgttgaaacatgtttgaattcacttcatagatgtttgtttat |
18830826 |
T |
|
| Q |
209 |
gtttatatgttg |
220 |
Q |
| |
|
|||||||||||| |
|
|
| T |
18830827 |
gtttatatgttg |
18830838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 39 - 223
Target Start/End: Original strand, 17161216 - 17161401
Alignment:
| Q |
39 |
gtaattatgg-tatgttaaacttcatggatttgatgtgtttatgtgcttaaattcatatttgttga---tgataagttgt-tttggtgattttttcttat |
133 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||| |||||| ||||||||||| ||||||||||||| |||| |
|
|
| T |
17161216 |
gtaattatgggtatgttaaacttcatggaattgatatgtttatgtgcttaaattcatagttgttgtcggtgataagttgtgtttggtgatttttgcttaa |
17161315 |
T |
|
| Q |
134 |
ttaagtgtaaaccatgaattgatgagtgattattgttggtacatgtttaaatttacttcgtaaatgtttatacatgtttatatgttgatg |
223 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||| ||||||||||||| | ||| |||| ||||||||||||||||||||||| |
|
|
| T |
17161316 |
ttaagtgtgaacgatgaattgatgagtgattattgttggaacatgtttaaattca-ttcataaa---ttatacatgtttatatgttgatg |
17161401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 50 - 217
Target Start/End: Complemental strand, 20148743 - 20148573
Alignment:
| Q |
50 |
atgttaaacttcatggatttgatgtgtttatgtgcttaaattcatatttgttgatg---ataagttgttttggtgattttttcttatttaagtgtaaacc |
146 |
Q |
| |
|
||||||||||||||||| |||| ||||| |||||||||||||||| |||||| || |||||||| ||||||||||||| |||| ||||||||||||| |
|
|
| T |
20148743 |
atgttaaacttcatggaattgacatgtttttgtgcttaaattcatagttgttgttggtgataagttgctttggtgatttttgcttaattaagtgtaaacc |
20148644 |
T |
|
| Q |
147 |
atgaattgatgagtgattattgttggtacatgtttaaatttacttcgtaaatgtttatacatgtttatatg |
217 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||||| ||||| |||||| |||| |||||| |||| |
|
|
| T |
20148643 |
atgaattgacgagtgattattgttggaacatgtttaaattcacttcataaatgagtatatatgtttgtatg |
20148573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 60 - 220
Target Start/End: Complemental strand, 16094854 - 16094691
Alignment:
| Q |
60 |
tcatggatttgatgtgtttatgtgcttaaattcatatttgttgatg---ataagttgttttggtgattttttcttatttaagtgtaaaccatgaattgat |
156 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||| |||||| || ||||||||||||| ||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
16094854 |
tcatggaattgacatgtttatgtgcttaaattcatagttgttgttggtgataagttgttttgatgattttcgcttaattaagtgtaaaccatgaattgat |
16094755 |
T |
|
| Q |
157 |
gagtgattattgttggtacatgtttaaatttacttcgtaaatgtttatacatgtttatatgttg |
220 |
Q |
| |
|
||||||||| | ||| ||||||| ||||| ||||| |||||| |||||||||||| ||||||| |
|
|
| T |
16094754 |
gagtgattactattgaaacatgttcaaattcacttcataaatggttatacatgtttgtatgttg |
16094691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 104 - 220
Target Start/End: Complemental strand, 16175285 - 16175169
Alignment:
| Q |
104 |
tgataagttgttttggtgattttttcttatttaagtgtaaaccatgaattgatgagtgattattgttggtacatgtttaaatttacttcgtaaatgttta |
203 |
Q |
| |
|
||||||||||||||| | |||||| |||| | ||||||||||||||||||||||||||||||||||||| |||||||||| || ||||| |||||| ||| |
|
|
| T |
16175285 |
tgataagttgttttgatcatttttgcttaatcaagtgtaaaccatgaattgatgagtgattattgttggaacatgtttaatttcacttcataaatgatta |
16175186 |
T |
|
| Q |
204 |
tacatgtttatatgttg |
220 |
Q |
| |
|
|| |||||| ||||||| |
|
|
| T |
16175185 |
taaatgtttgtatgttg |
16175169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 97 - 220
Target Start/End: Complemental strand, 16196719 - 16196596
Alignment:
| Q |
97 |
ttgttgatgataagttgttttggtgattttttcttatttaagtgtaaaccatgaattgatgagtgattattgttggtacatgtttaaatttacttcgtaa |
196 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| |||| | ||||||||||||||||||||||||| |||||||| || |||| |||||||| ||||| ||| |
|
|
| T |
16196719 |
ttgttggtgataagttgttttgatgatttttgcttaatcaagtgtaaaccatgaattgatgagtaattattgtaggaacatatttaaattcacttcataa |
16196620 |
T |
|
| Q |
197 |
atgtttatacatgtttatatgttg |
220 |
Q |
| |
|
||| ||||| | |||||||||||| |
|
|
| T |
16196619 |
atgattatataagtttatatgttg |
16196596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 147 - 223
Target Start/End: Complemental strand, 23099916 - 23099841
Alignment:
| Q |
147 |
atgaattgatgagtgattattgttggtacatgtttaaatttacttcgtaaatgtttatacatgtttatatgttgatg |
223 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| ||||| ||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
23099916 |
atgaattgataagtgattattgttgaaacatgttcaaattcacttcataaatgttt-tacatgtttatatgttgatg |
23099841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 170
Target Start/End: Original strand, 6460141 - 6460205
Alignment:
| Q |
106 |
ataagttgttttggtgattttttcttatttaagtgtaaaccatgaattgatgagtgattattgtt |
170 |
Q |
| |
|
|||||||||||||||||||||| || | |||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
6460141 |
ataagttgttttggtgatttttgctcaattaagtgtaaaccatggatttgtgagtgattattgtt |
6460205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 110 - 192
Target Start/End: Original strand, 8327243 - 8327325
Alignment:
| Q |
110 |
gttgttttggtgattttttcttatttaagtgtaaaccatgaattgatgagtgattattgttggtacatgtttaaatttacttc |
192 |
Q |
| |
|
||||||||| ||||||||| ||| | |||||||| || |||| |||||||||||||||||| |||||||| |||| ||||| |
|
|
| T |
8327243 |
gttgttttgatgattttttattaatagagtgtaaatcacgaatcgatgagtgattattgttgaaacatgtttgaattcacttc |
8327325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 153
Target Start/End: Complemental strand, 17913166 - 17913119
Alignment:
| Q |
106 |
ataagttgttttggtgattttttcttatttaagtgtaaaccatgaatt |
153 |
Q |
| |
|
||||||||||||||| ||||||||| | |||||||||||| ||||||| |
|
|
| T |
17913166 |
ataagttgttttggtaattttttctcaattaagtgtaaacgatgaatt |
17913119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 224
Target Start/End: Original strand, 11774072 - 11774200
Alignment:
| Q |
97 |
ttgttgatgataagttgttttggtgatttt-ttcttatttaagtgtaaaccatgaattgatgagtgattattgttggtacatgtttaaatttacttcgta |
195 |
Q |
| |
|
|||||| ||||||||||||||| ||||||| || || || |||| ||| ||||||||| ||||||||| |||||| | |||||| || | ||||| | |
|
|
| T |
11774072 |
ttgttgttgataagttgttttgatgattttcttattgattgagtgaaaatcatgaattggtgagtgattgttgttgaaatatgtttgaactcacttcatg |
11774171 |
T |
|
| Q |
196 |
aatgtttatacatgtttatatgttgatgt |
224 |
Q |
| |
|
||| ||| | |||||| ||||||||||| |
|
|
| T |
11774172 |
aatatttgtttatgtttgtatgttgatgt |
11774200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 5e-43; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 39 - 199
Target Start/End: Complemental strand, 13457111 - 13456947
Alignment:
| Q |
39 |
gtaattatgg-tatgttaaacttcatggatttgatgtgtttatgtgcttaaattcatatttgttgatgataagttgttttggtgattttttcttatttaa |
137 |
Q |
| |
|
|||||||||| |||| ||||||||||||| ||||| |||||||||||||||||||||| |||||| ||||||||||||| |||||||||| |||| |||| |
|
|
| T |
13457111 |
gtaattatgggtatggtaaacttcatggaattgatatgtttatgtgcttaaattcatagttgttggtgataagttgttt-ggtgatttttgcttaattaa |
13457013 |
T |
|
| Q |
138 |
----gtgtaaaccatgaattgatgagtgattattgttggtacatgtttaaatttacttcgtaaatg |
199 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| |||||| |
|
|
| T |
13457012 |
ttaagtgtaaaccatcaattgatgagtgattattgttggaacatgtttaaattcacttcataaatg |
13456947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 49 - 197
Target Start/End: Complemental strand, 26867997 - 26867846
Alignment:
| Q |
49 |
tatgttaaacttcatggatttgatgtgtttatgtgcttaaattcatatttgttgat---gataagttgttttggtgattttttcttatttaagtgtaaac |
145 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||| |||||| |||||| | |||||||||||||| || ||||| |||| |||||||||||| |
|
|
| T |
26867997 |
tatgttaaacttcatggaattgatatgtttatgtgcttaatttcatagttgttgtttgtgataagttgttttgatgttttttgcttaattaagtgtaaac |
26867898 |
T |
|
| Q |
146 |
catgaattgatgagtgattattgttggtacatgtttaaatttacttcgtaaa |
197 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||| ||||| |||| |
|
|
| T |
26867897 |
catgaattgatgagtgattattgttggaacaagtttaaattcacttcataaa |
26867846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 48 - 220
Target Start/End: Complemental strand, 26132811 - 26132636
Alignment:
| Q |
48 |
gtatgttaaacttcatggatttgatgtgtttatgtgcttaaattcatatttgttgat---gataagttgttttggtgattttttcttatttaagtgtaaa |
144 |
Q |
| |
|
|||||||||| |||||||| || ||||||||||||| | || ||| || ||| || | |||||||| |||||||||| ||| || | ||||||||||| |
|
|
| T |
26132811 |
gtatgttaaatttcatggaattaatgtgtttatgtgttcaagttcgtagttgatgtttgtgataagttattttggtgatgtttgctcaattaagtgtaaa |
26132712 |
T |
|
| Q |
145 |
ccatgaattgatgagtgattattgttggtacatgtttaaatttacttcgtaaatgtttatacatgtttatatgttg |
220 |
Q |
| |
|
||||||||| |||||||||||||||| |||||| |||||| | || |||||| ||||| |||||| ||||||| |
|
|
| T |
26132711 |
tcatgaattggtgagtgattattgttgaaacatgtctaaattcatttgataaatgattatatatgtttttatgttg |
26132636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 49 - 223
Target Start/End: Complemental strand, 26727848 - 26727676
Alignment:
| Q |
49 |
tatgttaaacttcatggatttgatgtgtttatgtgcttaaa-ttcatatttgttgatgataagttgttttggtgattttttcttatttaagtgtaaacca |
147 |
Q |
| |
|
|||| ||||||||||| | ||| |||||| ||||| ||||| |||||| |||||| |||||||||||| || |||||||| |||| | |||||||| || |
|
|
| T |
26727848 |
tatgataaacttcatgaaattgttgtgtt-atgtgtttaaacttcatagttgttgttgataagttgttatgatgatttttgcttactagagtgtaaatca |
26727750 |
T |
|
| Q |
148 |
tgaattgatgagtgattattgttggtacatgtttaaatttacttcgtaaatgtttatacatgtttatatgttgatg |
223 |
Q |
| |
|
||||||| ||||||||| |||||| ||| ||| |||| |||| |||||||||| | |||||| ||||| |||| |
|
|
| T |
26727749 |
tgaattggtgagtgattgttgttgaaaca--tttgaattcacttaataaatgtttacatatgtttgtatgtggatg |
26727676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 223
Target Start/End: Complemental strand, 17364294 - 17364122
Alignment:
| Q |
54 |
taaacttcatggatttgatgtgtttatgtgcttaaa-ttcatatttgttgatg---ataagttgttttggtgattttttcttatttaagtgtaaaccatg |
149 |
Q |
| |
|
||||||||||| | ||||| |||| ||||||||||| |||||| |||||| || ||||||||||||| |||||||| ||| |||||||| ||| |
|
|
| T |
17364294 |
taaacttcatgaaattgatatgtt-atgtgcttaaaattcatagttgttgttgttgataagttgttttgatgatttttgtttaactaagtgtatttaatg |
17364196 |
T |
|
| Q |
150 |
aattgatgagtgattattgttggtacatgtttaaatttacttcgtaaatgtttatacatgtttatatgttgatg |
223 |
Q |
| |
|
||||| |||||||||||||||| ||||| ||||||| |||| ||||||||||| |||||| ||||||||| |
|
|
| T |
17364195 |
aattggtgagtgattattgttgaaacatgcttaaattcacttaataaatgtttatttatgtttgcatgttgatg |
17364122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 8e-42; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 39 - 223
Target Start/End: Original strand, 12463658 - 12463845
Alignment:
| Q |
39 |
gtaattatggtatgttaaacttcatggatttgatgtgtttatgtgcttaaa-ttcatatttgttgat---gataagttgttttggtgattttttcttatt |
134 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||| |||| ||| ||||||| |||||| |||||| | ||||||||||||||||||||||| || ||| |
|
|
| T |
12463658 |
gtaattatggtatgttaaacttcaaggaattgatatgtt-atgggcttaaaattcatagttgttgttagtgataagttgttttggtgatttttgctcatt |
12463756 |
T |
|
| Q |
135 |
taagtgtaaaccatgaattgatgagtgattattgttggtacatgtttaaatttacttcgtaaatgtttatacatgtttatatgttgatg |
223 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||| |||||||||||| ||||| ||||| || ||||||||| |||||||||| |
|
|
| T |
12463757 |
taagtgtaaaccatgaattgatgaatgattattcttggaacatgtttaaatgcacttcataaattattttacatgtttgtatgttgatg |
12463845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 77 - 223
Target Start/End: Complemental strand, 12487844 - 12487697
Alignment:
| Q |
77 |
ttatgtgcttaaa-ttcatatttgttgatgataagttgttttggtgattttttcttatttaagtgtaaaccatgaattgatgagtgattattgttggtac |
175 |
Q |
| |
|
||||||||||||| |||||| |||||| ||||| | ||||||| |||||||| ||||||||||||| ||| ||||||||||||||||||||||||| | |
|
|
| T |
12487844 |
ttatgtgcttaaaattcatagttgttggtgataggctgttttgatgatttttgcttatttaagtgtgaactatgaattgatgagtgattattgttgaaat |
12487745 |
T |
|
| Q |
176 |
atgtttaaatttacttcgtaaatgtttatacatgtttatatgttgatg |
223 |
Q |
| |
|
||||||||||| ||| | ||||||||||||||||||| |||||||||| |
|
|
| T |
12487744 |
atgtttaaattcactacataaatgtttatacatgtttgtatgttgatg |
12487697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 48 - 222
Target Start/End: Original strand, 23294259 - 23294436
Alignment:
| Q |
48 |
gtatgttaaacttcatggatttgatgtgtttatgtgc-ttaaattcata---tttgttgatgataagttgttttggtgattttttcttatttaagtgtaa |
143 |
Q |
| |
|
||||||||||||||||| ||||| | || |||||||| | ||||||||| |||||| ||||||||||||||| ||||||| ||||||| ||| ||| |
|
|
| T |
23294259 |
gtatgttaaacttcatgaatttgttatg-ttatgtgcataaaattcatagttgttgttgctgataagttgttttgatgattttagcttatttgagtctaa |
23294357 |
T |
|
| Q |
144 |
accatgaattgatgagtgattattgttggtacatgtttaaatttacttcgtaaatgtttatacatgtttatatgttgat |
222 |
Q |
| |
|
| |||||||||| ||||||||||||| | ||||||||||| ||||| || ||||||| |||||||| ||||||||| |
|
|
| T |
23294358 |
attatgaattgataagtgattattgttaaaatatgtttaaattcacttcatagatgtttacacatgtttgtatgttgat |
23294436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 97 - 223
Target Start/End: Complemental strand, 14354378 - 14354252
Alignment:
| Q |
97 |
ttgttgatgataagttgttttggtgattttttcttatttaagtgtaaaccatgaattgatgagtgattattgttggtacatgtttaaatttacttcgtaa |
196 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| ||| || |||||||| |||||||| |||||||||| |||||| |||||||| |||| |||| ||| |
|
|
| T |
14354378 |
ttgttgttgataagttgttttgatgatttttgattaattgagtgtaaatcatgaattaatgagtgattcttgttgaaacatgtttgaattcactttataa |
14354279 |
T |
|
| Q |
197 |
atgtttatacatgtttatatgttgatg |
223 |
Q |
| |
|
||||||||| |||||| | |||||||| |
|
|
| T |
14354278 |
atgtttatatatgtttgtctgttgatg |
14354252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 223
Target Start/End: Complemental strand, 23299696 - 23299610
Alignment:
| Q |
137 |
agtgtaaaccatgaattgatgagtgattattgttggtacatgtttaaatttacttcgtaaatgtttatacatgtttatatgttgatg |
223 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||| |||||| |||||||||| |
|
|
| T |
23299696 |
agtgtaaatcatgaattgatgagtgattattgttgaaacatgtttaaattcacttcataaatgtttatttatgtttgtatgttgatg |
23299610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 97 - 219
Target Start/End: Original strand, 19977352 - 19977475
Alignment:
| Q |
97 |
ttgttgatgataa-gttgttttggtgattttttcttatttaagtgtaaaccatgaattgatgagtgattattgttggtacatgtttaaatttacttcgta |
195 |
Q |
| |
|
|||||| |||||| |||||||||||||||| | ||| || |||||| ||||||||| ||||| ||| |||||| ||||||||||||| ||||| || |
|
|
| T |
19977352 |
ttgttgttgataatgttgttttggtgatttgtatttaattgggtgtaagtcatgaattggtgagtcattgttgttgaaacatgtttaaattcacttcata |
19977451 |
T |
|
| Q |
196 |
aatgtttatacatgtttatatgtt |
219 |
Q |
| |
|
||| |||||||| |||| |||||| |
|
|
| T |
19977452 |
aatttttatacacgtttgtatgtt |
19977475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 23350330 - 23350239
Alignment:
| Q |
106 |
ataagttgttttggtgattttttcttatttaagtgtaaaccatgaattgatgagtgattattgttggtacatgtttaaatttacttcgtaaa |
197 |
Q |
| |
|
|||| |||||||| |||||||| |||||| |||||| | |||||| ||||||||||||||||||| ||||||| ||||| ||||| |||| |
|
|
| T |
23350330 |
ataacttgttttgatgatttttgcttattcaagtgtgtaacatgaaatgatgagtgattattgttgaaacatgttcaaattcacttcataaa |
23350239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 181
Target Start/End: Original strand, 14566557 - 14566691
Alignment:
| Q |
47 |
ggtatgttaaacttcatggatttgatgtgtttatgtgcttaaa-ttcatatttgttgatgataagttgttttggtgattttttcttatttaagtgtaaac |
145 |
Q |
| |
|
|||||| ||||||||||| | ||| |||||| ||| ||||||| |||||| |||||| || |||||| ||||| || |||| ||| || |||||||| |
|
|
| T |
14566557 |
ggtatgataaacttcatgaaattgttgtgtt-atgagcttaaacttcatagttgttgttgttaagttattttgaagacttttgattaattgagtgtaaat |
14566655 |
T |
|
| Q |
146 |
catgaattgatgagtgattattgttggtacatgttt |
181 |
Q |
| |
|
||||||||||||||||||| ||| || |||||||| |
|
|
| T |
14566656 |
catgaattgatgagtgattgttgatgaaacatgttt |
14566691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 148
Target Start/End: Complemental strand, 17913751 - 17913647
Alignment:
| Q |
47 |
ggtatgttaaacttcatggatttgatgtgtttatgtgcttaaattcatatttgttgatg---ataagttgttttggtgattttttcttatttaagtgtaa |
143 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||| || | | |||||| ||| || | |||||||||||||||||||||| || | |||||||||| |
|
|
| T |
17913751 |
ggtatgttaaatttcatggaattgatgtgtttatatgttcgagttcatagttgatgtttgaaataagttgttttggtgatttttcctcaattaagtgtaa |
17913652 |
T |
|
| Q |
144 |
accat |
148 |
Q |
| |
|
||||| |
|
|
| T |
17913651 |
accat |
17913647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 223
Target Start/End: Complemental strand, 10974978 - 10974851
Alignment:
| Q |
96 |
tttgttgatgataagttgttttggtgattttttcttatttaagtgtaaaccatgaattgatgagtgattattgttggtacatgtttaaatttacttcgta |
195 |
Q |
| |
|
||||||| || | ||||||||| ||||||||| |||||| |||| || |||||||||||| ||||| |||||| || ||||| |||| ||||| | |
|
|
| T |
10974978 |
tttgttgttgttgagttgttttaatgattttttattatttgagtgaaattcatgaattgatgtatgattcttgttgaaacttgtttgaattcacttcatt |
10974879 |
T |
|
| Q |
196 |
aatgtttatacatgtttatatgttgatg |
223 |
Q |
| |
|
||||||| | |||||||| |||||||| |
|
|
| T |
10974878 |
aatgtttgtttatgtttatgtgttgatg |
10974851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 49 - 197
Target Start/End: Complemental strand, 51952 - 51801
Alignment:
| Q |
49 |
tatgttaaacttcatggatttgatgtgtttatgtgcttaaattcatatttgttgat---gataagttgttttggtgattttttcttatttaagtgtaaac |
145 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||| |||||| |||||| | |||||||||||||| |||||||| |||| |||||||||||| |
|
|
| T |
51952 |
tatgttaaacttcatggaactgatatgtttatgtgcttaatttcatagttgttgtttgtgataagttgttttgatgatttttgcttaattaagtgtaaac |
51853 |
T |
|
| Q |
146 |
catgaattgatgagtgattattgttggtacatgtttaaatttacttcgtaaa |
197 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||| || ||||| |||| |
|
|
| T |
51852 |
catgaattgatgagtgattattgttggaacaagtttaatttcacttcataaa |
51801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 106 - 223
Target Start/End: Original strand, 40354378 - 40354495
Alignment:
| Q |
106 |
ataagttgttttggtgattttttcttatttaagtgtaaaccatgaattgatgagtgattattgttggtacatgtttaaatttacttcgtaaatgtttata |
205 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||| | ||||||||| |
|
|
| T |
40354378 |
ataagttgttttgatgatttttgcttatttaagtgtaaaccatgaattgatgagtgatttatgttggaacatgtttaaattcacttcttgaatgtttatt |
40354477 |
T |
|
| Q |
206 |
catgtttatatgttgatg |
223 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
40354478 |
tatgtttatatgttgatg |
40354495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 106 - 223
Target Start/End: Original strand, 19632001 - 19632118
Alignment:
| Q |
106 |
ataagttgttttggtgattttttcttatttaagtgtaaaccatgaattgatgagtgattattgttggtacatgtttaaatttacttcgtaaatgtttata |
205 |
Q |
| |
|
||||||||||||| |||||||| |||| || |||||||| |||||||||||||||||||||||||| ||||| ||||||| ||||| ||||||||||| |
|
|
| T |
19632001 |
ataagttgttttgatgatttttgcttaattgagtgtaaatcatgaattgatgagtgattattgttgaaacatgcttaaattcacttcataaatgtttatg |
19632100 |
T |
|
| Q |
206 |
catgtttatatgttgatg |
223 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
19632101 |
catgtttgtatgttgatg |
19632118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 110 - 223
Target Start/End: Original strand, 19659898 - 19660011
Alignment:
| Q |
110 |
gttgttttggtgattttttcttatttaagtgtaaaccatgaattgatgagtgattattgttggtacatgtttaaatttacttcgtaaatgtttatacatg |
209 |
Q |
| |
|
||||||||| |||||||| |||| || |||||||| |||||||||||||||||||||||||| ||||| ||||||| ||||| ||||||| ||||| || |
|
|
| T |
19659898 |
gttgttttgatgatttttgcttaattgagtgtaaatcatgaattgatgagtgattattgttgaaacatgcttaaattcacttcataaatgtctatacctg |
19659997 |
T |
|
| Q |
210 |
tttatatgttgatg |
223 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
19659998 |
tttgtatgttgatg |
19660011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 97 - 223
Target Start/End: Complemental strand, 15539122 - 15538996
Alignment:
| Q |
97 |
ttgttgatgataagttgttttggtgattttttcttatttaagtgtaaaccatgaattgatgagtgattattgttggtacatgtttaaatttacttcgtaa |
196 |
Q |
| |
|
|||||| || ||||| ||||| |||||||| ||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| |||| ||| |
|
|
| T |
15539122 |
ttgttgttgttaagtgattttgatgatttttgcttatttgagtgtaaatcatgaattgatgagtgattattgttgaaacatgtttaaattcactttataa |
15539023 |
T |
|
| Q |
197 |
atgtttatacatgtttatatgttgatg |
223 |
Q |
| |
|
|||||| |||||| |||||||||| |
|
|
| T |
15539022 |
atgtttgattatgtttgtatgttgatg |
15538996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 97 - 223
Target Start/End: Complemental strand, 19614490 - 19614362
Alignment:
| Q |
97 |
ttgttgatgataagttgttttggtgatttttt--cttatttaagtgtaaaccatgaattgatgagtgattattgttggtacatgtttaaatttacttcgt |
194 |
Q |
| |
|
|||||| |||||||||||| || |||||||| |||| |||||||| | |||||||| | |||||||||||||| ||||||||||||| ||||| | |
|
|
| T |
19614490 |
ttgttgttgataagttgttctgaagatttttttacttaactaagtgtattcaatgaattggtaagtgattattgttgaaacatgtttaaattcacttcat |
19614391 |
T |
|
| Q |
195 |
aaatgtttatacatgtttatatgttgatg |
223 |
Q |
| |
|
|||||||||||||||||| |||||||||| |
|
|
| T |
19614390 |
aaatgtttatacatgtttgtatgttgatg |
19614362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 202
Target Start/End: Complemental strand, 10726046 - 10725941
Alignment:
| Q |
97 |
ttgttgatgataagttgttttggtgattttttcttatttaagtgtaaaccatgaattgatgagtgattattgttggtacatgtttaaatttacttcgtaa |
196 |
Q |
| |
|
|||||| || |||||||||||| ||||||||| ||| || |||||||| ||||||||| ||||||||| |||||| |||||||| |||| ||||| | | |
|
|
| T |
10726046 |
ttgttgttgttaagttgttttgatgattttttattaattgagtgtaaatcatgaattggtgagtgattgttgttgaaacatgtttgaattcacttcatga |
10725947 |
T |
|
| Q |
197 |
atgttt |
202 |
Q |
| |
|
|||||| |
|
|
| T |
10725946 |
atgttt |
10725941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 223
Target Start/End: Original strand, 2547098 - 2547276
Alignment:
| Q |
48 |
gtatgttaaacttcatggatttgatgtgtttatgtgcttaaa-ttcatatttgttgatgat---aagttgttttggtgattttttcttatttaagtgtaa |
143 |
Q |
| |
|
||||| ||||||||||| | ||| |||||| ||||||||||| |||||| |||||| || | |||| ||||| |||||||| |||||| ||||||| |
|
|
| T |
2547098 |
gtatgataaacttcatgaaattgttgtgtt-atgtgcttaaacttcatagttgttgttgttgttaagtgattttgatgatttttgtttatttgagtgtaa |
2547196 |
T |
|
| Q |
144 |
accatgaattgatgagtgattattgttggtacatgtttaaatttacttcgtaaatgtttatacatgtttatatgttgatg |
223 |
Q |
| |
|
| | |||||| ||||||||| |||||| ||||||||||||| ||||| | ||| ||| | |||||| |||||||||| |
|
|
| T |
2547197 |
atcgtgaatttgtgagtgattgttgttgaaacatgtttaaattcacttcatgaatatttgtttatgtttgtatgttgatg |
2547276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 14305447 - 14305507
Alignment:
| Q |
108 |
aagttgttttggtgattttttcttatttaagtgtaaaccatgaattgatgagtgattattg |
168 |
Q |
| |
|
|||||| ||||||||||||| || | ||| |||||||||||||||| |||||||||||| |
|
|
| T |
14305447 |
aagttggtttggtgatttttgctcaattatgtgtaaaccatgaatttgggagtgattattg |
14305507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0417 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0417
Description:
Target: scaffold0417; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 49 - 220
Target Start/End: Complemental strand, 3742 - 3568
Alignment:
| Q |
49 |
tatgttaaacttcatggatttgatgtgtttatgtgcttaaattcatatttgttgatg---ataagttgttttggtgattttttcttatttaagtgtaaac |
145 |
Q |
| |
|
|||||||||||||||| | ||||||||||||| || | || |||||| |||||| || |||||||||||||||||||||| | | |||||||||| | |
|
|
| T |
3742 |
tatgttaaacttcatgaaattgatgtgtttatatgttcaagttcatagttgttgttggtgataagttgttttggtgatttttgttcaattaagtgtaatc |
3643 |
T |
|
| Q |
146 |
catgaattgatgagtgattattgttggtacatgtttaaatttacttcgtaaatgtttatacatgtttatatgttg |
220 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||| ||||| |||||| ||||| ||| || ||||||| |
|
|
| T |
3642 |
catgaattgatgagtgattattgttggaacatgttcaaattcacttcataaatgattatatatgcttgtatgttg |
3568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 97 - 219
Target Start/End: Complemental strand, 155071 - 154949
Alignment:
| Q |
97 |
ttgttgatgataagttgttttggtgattttttcttatttaagtgtaaaccatgaattgatgagtgattattgttggtacatgtttaaatttacttcgtaa |
196 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| || ||| |||||| |||||||||||||||||||||||| |||| ||||||||||||| ||||| ||| |
|
|
| T |
155071 |
ttgttgttgataagttgttttgatgatttttgctcattcaagtgtgaaccatgaattgatgagtgattatggttgaaacatgtttaaattcacttcataa |
154972 |
T |
|
| Q |
197 |
atgtttatacatgtttatatgtt |
219 |
Q |
| |
|
|||||||||||||||| |||||| |
|
|
| T |
154971 |
atgtttatacatgtttgtatgtt |
154949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 54 - 223
Target Start/End: Complemental strand, 17959988 - 17959819
Alignment:
| Q |
54 |
taaacttcatggatttgatgtgtttatgtgcttaaat-tcatatttgttgatgataagttgttttggtgattttttcttatttaagtgtaaaccatgaat |
152 |
Q |
| |
|
||||||||||| ||||| | |||| ||||||||||| ||| | |||||| |||||||||||||||||||||||| ||||||| ||||||| ||||||| |
|
|
| T |
17959988 |
taaacttcatgaatttgttatgtt-atgtgcttaaaactcaaagttgttgttgataagttgttttggtgatttttgcttatttgagtgtaagtcatgaat |
17959890 |
T |
|
| Q |
153 |
tgatgagtgattattgttggtacatgtttaaatttacttcgtaaatgtttatacatgtttatatgttgatg |
223 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||| ||||| |||| |||||| ||| |||||| |
|
|
| T |
17959889 |
tgatgagtgattattgttgaaacatgtttaaattcacttcacaaatgcttatttatgtttgtatcttgatg |
17959819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 47 - 219
Target Start/End: Original strand, 19605761 - 19605936
Alignment:
| Q |
47 |
ggtatgttaaacttcatggatttgatgtgtttatgtgcttaaattcatatttg---ttgatgataagttgttttggtgattttttcttatttaagtgtaa |
143 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||| || | || |||||| ||| || |||||||||||||||||| ||| || | |||| ||||| |
|
|
| T |
19605761 |
ggtatgttaaatttcatggaattgatgtgtttatatgttcaagttcatagttgaatttcgaaataagttgttttggtgatatttgctcaattaattgtaa |
19605860 |
T |
|
| Q |
144 |
accatgaattgatgagtgattattgttggtacatgtttaaatttacttcgtaaatgtttatacatgtttatatgtt |
219 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||| |||| || ||| ||||| |||||| |||||| |
|
|
| T |
19605861 |
gccatgaattgatgagtgattattgttcaaacatgtgtaaattcactttatatatgattatatatgtttgtatgtt |
19605936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 167
Target Start/End: Original strand, 2493742 - 2493874
Alignment:
| Q |
39 |
gtaattatg-gtatgttaaacttcatggatttgatgtgtttatgtgcttaaattcatatttgttgatg---ataagttgttttggtgattttttcttatt |
134 |
Q |
| |
|
||||||||| ||||||| || || ||||| ||||||||||||| || | || |||||| ||| || | |||||||||||||||| |||||||| | | |
|
|
| T |
2493742 |
gtaattatgagtatgttgaattttatggaattgatgtgtttatatgttcaagttcatagttgatgtttgaaataagttgttttggtgtttttttctcaat |
2493841 |
T |
|
| Q |
135 |
taagtgtaaaccatgaattgatgagtgattatt |
167 |
Q |
| |
|
||||||||||||||||||| | |||||||||| |
|
|
| T |
2493842 |
taagtgtaaaccatgaatttgtaagtgattatt |
2493874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 202
Target Start/End: Complemental strand, 21982083 - 21981927
Alignment:
| Q |
47 |
ggtatgttaaacttcatggatttgatgtgtttatgtgcttaaa-ttcatatttgttgatgataagttgttttggtgattttttcttatttaagtgtaaac |
145 |
Q |
| |
|
|||||| ||||||| ||| | ||| |||||||| | ||||||| |||||| |||||| || | |||||||||| ||| |||| |||||| || |||| |
|
|
| T |
21982083 |
ggtatgataaacttaatgaaattgttgtgtttaagagcttaaacttcatagttgttgttgttgagttgttttgatgaattttgattatttgcgtataaat |
21981984 |
T |
|
| Q |
146 |
catgaattgatgagtgattattgttggtacatgtttaaatttacttcgtaaatgttt |
202 |
Q |
| |
|
|||||||||||| | |||| |||||| |||||||| |||| ||||| | ||||||| |
|
|
| T |
21981983 |
catgaattgatgtgggattgttgttgaaacatgtttgaattcacttcattaatgttt |
21981927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 97 - 223
Target Start/End: Complemental strand, 11776299 - 11776173
Alignment:
| Q |
97 |
ttgttgatgataagttgttttggtgattttttcttatttaagtgtaaaccatgaattgatgagtgattattgttggtacatgtttaaatttacttcgtaa |
196 |
Q |
| |
|
|||||| |||||||||||||| |||||||| ||| || ||||| || ||||||||| ||||||||| |||||| | |||||||| | ||||| | | |
|
|
| T |
11776299 |
ttgttgttgataagttgttttaatgatttttgattaattgagtgtgaatcatgaattggtgagtgattgttgttgaaatgtgtttaaaatcacttcatga |
11776200 |
T |
|
| Q |
197 |
atgtttatacatgtttatatgttgatg |
223 |
Q |
| |
|
|||||| | |||||| |||||||||| |
|
|
| T |
11776199 |
atgtttgtttatgtttgtatgttgatg |
11776173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 97 - 223
Target Start/End: Complemental strand, 15711494 - 15711368
Alignment:
| Q |
97 |
ttgttgatgataagttgttttggtgattttttcttatttaagtgtaaaccatgaattgatgagtgattattgttggtacatgtttaaatttacttcgtaa |
196 |
Q |
| |
|
|||||| || |||||||||||| ||||||| ||| || ||||| || ||||||||| ||||||||| |||||| |||||||| |||| ||||| | | |
|
|
| T |
15711494 |
ttgttgttgttaagttgttttgaagatttttgattaattgagtgtgaatcatgaattggtgagtgattgttgttgaaacatgtttgaattcacttcatga |
15711395 |
T |
|
| Q |
197 |
atgtttatacatgtttatatgttgatg |
223 |
Q |
| |
|
|||||| | |||||| | |||||||| |
|
|
| T |
15711394 |
atgtttgtttatgtttgtgtgttgatg |
15711368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1114 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold1114
Description:
Target: scaffold1114; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 97 - 222
Target Start/End: Complemental strand, 1969 - 1844
Alignment:
| Q |
97 |
ttgttgatgataagttgttttggtgattttttcttatttaagtgtaaaccatgaattgatgagtgattattgttggtacatgtttaaatttacttcgtaa |
196 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| |||||||||||| ||||||||||| | ||||| |||||||| || |||||||||| ||||| ||| |
|
|
| T |
1969 |
ttgttgttgataagttgttttgatgatttttgcttatttaagtgcgaaccatgaattaaagagtggttattgttaaaacgtgtttaaattcacttcataa |
1870 |
T |
|
| Q |
197 |
atgtttatacatgtttatatgttgat |
222 |
Q |
| |
|
|||||||||||||||| ||||||||| |
|
|
| T |
1869 |
atgtttatacatgtttgtatgttgat |
1844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 97 - 202
Target Start/End: Complemental strand, 21654281 - 21654176
Alignment:
| Q |
97 |
ttgttgatgataagttgttttggtgattttttcttatttaagtgtaaaccatgaattgatgagtgattattgttggtacatgtttaaatttacttcgtaa |
196 |
Q |
| |
|
|||||| || |||||||||||| |||||||| ||| || |||||||| ||||||||| ||||||||| |||||| |||||||| |||| ||||| | | |
|
|
| T |
21654281 |
ttgttgttgttaagttgttttgatgatttttgattaattgagtgtaaatcatgaattggtgagtgattgttgttgaaacatgtttgaattcacttcatga |
21654182 |
T |
|
| Q |
197 |
atgttt |
202 |
Q |
| |
|
|||||| |
|
|
| T |
21654181 |
atgttt |
21654176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 192
Target Start/End: Complemental strand, 28774289 - 28774206
Alignment:
| Q |
109 |
agttgttttggtgattttttcttatttaagtgtaaaccatgaattgatgagtgattattgttggtacatgtttaaatttacttc |
192 |
Q |
| |
|
|||||||||| |||||||| || || |||||||| |||||||||||| |||||| |||||| |||||||| |||| ||||| |
|
|
| T |
28774289 |
agttgttttgatgatttttgactagttgagtgtaaatcatgaattgatgtgtgattgttgttgaaacatgtttgaattcacttc |
28774206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 5428 - 5358
Alignment:
| Q |
149 |
gaattgatgagtgattattgttggtacatgtttaaatttacttcgtaaatgtttatacatgtttatatgtt |
219 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||| ||||| ||||||||||| || |||||||||| |
|
|
| T |
5428 |
gaattgatgagtgattattgttgacacatatttaaattcacttcataaatgtttatttatatttatatgtt |
5358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 171
Target Start/End: Complemental strand, 21719817 - 21719690
Alignment:
| Q |
47 |
ggtatgttaaacttcatggatttgatgtgtttatgtgcttaaa-ttcatatttgttgatg---ataagttgttttggtgattttttcttatttaagtgta |
142 |
Q |
| |
|
|||||| ||||||||||| | ||| |||||| ||||||||||| |||||| |||||| || |||||||||||||||||||||| ||| || |||||| |
|
|
| T |
21719817 |
ggtatgataaacttcatgaaattgttgtgtt-atgtgcttaaacttcatagttgttgttgttgataagttgttttggtgatttttgattaattgagtgta |
21719719 |
T |
|
| Q |
143 |
aaccatgaattgatgagtgattattgttg |
171 |
Q |
| |
|
|| |||||| || ||||| ||| |||||| |
|
|
| T |
21719718 |
aatcatgaaatggtgagtaattgttgttg |
21719690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 220
Target Start/End: Original strand, 106008 - 106122
Alignment:
| Q |
106 |
ataagttgttttggtgattttttcttatttaagtgtaaaccatgaattgatgagtgattattgttggtacatgtttaaatttacttcgtaaatgtttata |
205 |
Q |
| |
|
||||||||||||||| |||||| || | ||||||||| |||||||||| ||||||||| ||||| |||||| |||||| |||| || ||| ||||| |
|
|
| T |
106008 |
ataagttgttttggtaatttttgctcaattaagtgtagaccatgaatttgtgagtgattgttgttcaaacatgtctaaattcacttgatatatgattata |
106107 |
T |
|
| Q |
206 |
catgtttatatgttg |
220 |
Q |
| |
|
|| ||| ||||||| |
|
|
| T |
106108 |
tatatttgtatgttg |
106122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 170
Target Start/End: Original strand, 36915 - 36979
Alignment:
| Q |
106 |
ataagttgttttggtgattttttcttatttaagtgtaaaccatgaattgatgagtgattattgtt |
170 |
Q |
| |
|
|||||| ||||||||||||||| || | |||||||||||||||||| | ||||| ||||||||| |
|
|
| T |
36915 |
ataagtggttttggtgatttttgctcaattaagtgtaaaccatgaaattgtgagtaattattgtt |
36979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0530 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0530
Description:
Target: scaffold0530; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 202
Target Start/End: Complemental strand, 3078 - 2952
Alignment:
| Q |
77 |
ttatgtgcttaaa-ttcatatttgttgatgataagttgttttggtgattttttcttatttaagtgtaaaccatgaattgatgagtgattattgttggtac |
175 |
Q |
| |
|
||||||||||||| |||||| |||||| || ||||| |||| |||||||| || ||| ||| |||| |||||||| |||||| || |||||| || |
|
|
| T |
3078 |
ttatgtgcttaaacttcatagttgttgctgttaagtgatttttatgatttttgctagtttgagtttaaatcatgaatttgtgagtggttgttgttgaaac |
2979 |
T |
|
| Q |
176 |
atgtttaaatttacttcgtaaatgttt |
202 |
Q |
| |
|
||||||||||| ||||| | ||||||| |
|
|
| T |
2978 |
atgtttaaattcacttcatgaatgttt |
2952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0412 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0412
Description:
Target: scaffold0412; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 223
Target Start/End: Complemental strand, 3291 - 3175
Alignment:
| Q |
107 |
taagttgttttggtgattttttcttatttaagtgtaaaccatgaattgatgagtgattattgttggtacatgtttaaatttacttcgtaaatgtttatac |
206 |
Q |
| |
|
||||||||||| |||||||| ||||| |||| || |||||||||||| ||||| |||||| |||| ||| |||| ||||| | ||||||||| |
|
|
| T |
3291 |
taagttgttttcatgatttttgactatttgagtgaaattcatgaattgatgtatgattcttgttgaaacatatttgaattcacttcattaatgtttattt |
3192 |
T |
|
| Q |
207 |
atgtttatatgttgatg |
223 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
3191 |
atgtttatgtgttgatg |
3175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University