View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11385A_low_267 (Length: 235)
Name: NF11385A_low_267
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_267 |
 | |
|
| [»] scaffold0007 (1 HSPs) |
| |
|
| [»] scaffold0315 (1 HSPs) |
| | |
|
| [»] scaffold0227 (1 HSPs) |
| | |
|
| [»] scaffold0120 (2 HSPs) |
| | |
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| [»] scaffold0066 (1 HSPs) |
| | |
|
| [»] scaffold0004 (1 HSPs) |
| | |
|
| [»] scaffold0334 (1 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 144812 - 145027
Alignment:
| Q |
20 |
gttgaatagctaggtttgatgatgaaggttggctatttgaggagattggagtttgattgttaagggttgatcagaatcagactctataatcacagtagag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
144812 |
gttgaatagctaggtttgatgatgaaggttggctatttgaggagattggagtttgattgttaagggttgatcagaatcagactctataatcacagtagag |
144911 |
T |
|
| Q |
120 |
gaagagtttaattgctcaacctcagcatcagaagcttctgatgtgatcataaagtcaggttcactgatggtttcaggaatagagggtgatgtaggttgtt |
219 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
144912 |
gaagagtttaattgctcaacctcaacatcagaagcttctgatgtgatcataaagtcagattcactgacggtttcaggaatagagggtgatgtaggttgtt |
145011 |
T |
|
| Q |
220 |
gagaatcaagttgctc |
235 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
145012 |
tagaatcaagttgctc |
145027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 20 - 232
Target Start/End: Complemental strand, 18139960 - 18139741
Alignment:
| Q |
20 |
gttgaatagctaggtttgatgatgaaggttggctatttgaggagattggagtttgattgttaagggttgat-------cagaatcagactctataatcac |
112 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||| |
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|
| T |
18139960 |
gttggatatctaggtttgatgatgaaggttggctatttgaggagattggagtttgattgtttagggttgatggttgatcagaaacagactctataatcat |
18139861 |
T |
|
| Q |
113 |
agtagaggaagagtttaattgctcaacctcagcatcagaagcttctgatgtgatcataaagtcaggttcactgatggtttcaggaatagagggtgatgta |
212 |
Q |
| |
|
|||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| || |||| | |
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|
| T |
18139860 |
agtaaaggaagagtttaattgcttaacctcaacatcagaagcttctgatgtgatcataaagtcaggttcactgacaattttaggaatagaaggggatgga |
18139761 |
T |
|
| Q |
213 |
ggttgttgagaatcaagttg |
232 |
Q |
| |
|
| ||||| |||| ||||||| |
|
|
| T |
18139760 |
gtttgtttagaagcaagttg |
18139741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 17256012 - 17255963
Alignment:
| Q |
135 |
tcaacctcagcatcagaagcttctgatgtgatcataaagtcaggttcact |
184 |
Q |
| |
|
||||||||| ||||| || ||||||||||||||||||| | ||||||||| |
|
|
| T |
17256012 |
tcaacctcatcatcataatcttctgatgtgatcataaaattaggttcact |
17255963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 21626818 - 21627029
Alignment:
| Q |
20 |
gttgaatagctaggtttgatgatgaaggttggctatttgaggagattggagtttgattgtta-------agggttgatcagaatcagactctataatcac |
112 |
Q |
| |
|
|||| ||||||||||||||| || ||||||| | |||| |||| ||||||| |||||||| | ||||| |||||| |||||||||||||||| |
|
|
| T |
21626818 |
gttggatagctaggtttgataataaaggttgattgtttgtggaggttggagtctgattgttggttgttgaaggttggtcagaaacagactctataatcac |
21626917 |
T |
|
| Q |
113 |
agtagaggaagagtttaattgctcaacctcagcatcagaagcttctgatgtgatcataaagtcaggttcactgatggtttcaggaatagagggtgatgta |
212 |
Q |
| |
|
| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
21626918 |
attagaggaagagtttaatttctcaacctcaacatcagaagcttctgatgtgatcataaagtcaggttcactgacagtttcaagaatagagggtgatgta |
21627017 |
T |
|
| Q |
213 |
ggttgttgagaa |
224 |
Q |
| |
|
| ||||| |||| |
|
|
| T |
21627018 |
gtttgttcagaa |
21627029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 84 - 228
Target Start/End: Original strand, 22803892 - 22804036
Alignment:
| Q |
84 |
ggttgatcagaatcagactctataatcacagtagaggaagagtttaattgctcaacctcagcatcagaagcttctgatgtgatcataaagtcaggttcac |
183 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||| |||||||||| |||||| ||||| || |||||| ||| ||||||||||| |||||||||| |
|
|
| T |
22803892 |
ggttgatcagaaccagactccataatcacagtagaagaagagtttatttgctcttcctcaatattagaagcatctaatgtgatcataggttcaggttcac |
22803991 |
T |
|
| Q |
184 |
tgatggtttcaggaatagagggtgatgtaggttgttgagaatcaa |
228 |
Q |
| |
|
||| |||||||| |||| | |||||||||||| | |||||||| |
|
|
| T |
22803992 |
tgacagtttcagggatagctgatgatgtaggttgatcagaatcaa |
22804036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 18939548 - 18939734
Alignment:
| Q |
20 |
gttgaatagctaggtttgatgatgaaggttggctatttgaggagattggagtttgattgtta-------agggttgatcagaatcagactctataatcac |
112 |
Q |
| |
|
|||| ||| ||||| |||||||||||||||||||||||| || | |||||||||||||||| | ||||||| |||| || |||||| |||||| |
|
|
| T |
18939548 |
gttggataactaggcttgatgatgaaggttggctatttgtgggggttggagtttgattgttggttaatgatggttgattagaaacaaactctacaatcac |
18939647 |
T |
|
| Q |
113 |
agtagaggaagagtttaattgctcaacctcagcatcagaagcttctgatgtgatcataaagtcaggttcactgatggtttcaggaat |
199 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
18939648 |
attagaggaagagtttaattgctcaacctcaacatcagaagcttctgatgtgatcataaagtcaggttcactgacagtttcaggaat |
18939734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 35 - 192
Target Start/End: Original strand, 23236541 - 23236705
Alignment:
| Q |
35 |
ttgatgatgaaggttggctatttgaggagattggagtttgattg-------ttaagggttgatcagaatcagactctataatcacagtagaggaagagtt |
127 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||| || | |||||||||| | |||||| || ||||| |||| |||||||||| |
|
|
| T |
23236541 |
ttgatgatgaaggttggctatttgtggaggttggagtttgattgctggttattgaaggttgatcaggagcagactttacaatcatagtaaaggaagagtt |
23236640 |
T |
|
| Q |
128 |
taattgctcaacctcagcatcagaagcttctgatgtgatcataaagtcaggttcactgatggttt |
192 |
Q |
| |
|
||| |||||| ||||| |||||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
23236641 |
taactgctcatcctcaacatcagaagcttctgatgtgatcataaagtcaagttcactgacggttt |
23236705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 36 - 232
Target Start/End: Complemental strand, 22463098 - 22462895
Alignment:
| Q |
36 |
tgatgatgaaggttggctatttgaggagattggagtttgattgttaagggttgat-------cagaatcagactctataatcacagtagaggaagagttt |
128 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||||| | ||||||| ||||| ||||||| ||||||||| |||| ||||||||| |
|
|
| T |
22463098 |
tgatgatgaaggttggctatttatggaggttggagtttgattgtttatggttgatggttgatcagaaccagactccataatcacaatagaagaagagttt |
22462999 |
T |
|
| Q |
129 |
aattgctcaacctcagcatcagaagcttctgatgtgatcataaagtcaggttcactgatggtttcaggaatagagggtgatgtaggttgttgagaatcaa |
228 |
Q |
| |
|
| |||||| ||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||| || ||||||| |||||||| | |||||| |
|
|
| T |
22462998 |
atttgctcttcctcaacatcagaagcatctgatgtgatcataggttcaggttcactgatggtttcaggaattgaaggtgatggaggttgttcataatcaa |
22462899 |
T |
|
| Q |
229 |
gttg |
232 |
Q |
| |
|
|||| |
|
|
| T |
22462898 |
gttg |
22462895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 232
Target Start/End: Complemental strand, 9708240 - 9708021
Alignment:
| Q |
20 |
gttgaatagctaggtttgatgatgaaggttggctatttgaggagattggagtttgattgttaagggttgat-------cagaatcagactctataatcac |
112 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||| |||| |||| || ||||||||||||| ||||||||| ||||| ||||||| |||||||| |
|
|
| T |
9708240 |
gttggatagctagaattgatgatgaaggttggctgtttgtggaggttcgagtttgattgtttagggttgatggttgatcagaaccagactccataatcac |
9708141 |
T |
|
| Q |
113 |
agtagaggaagagtttaattgctcaacctcagcatcagaagcttctgatgtgatcataaagtcaggttcactgatggtttcaggaatagagggtgatgta |
212 |
Q |
| |
|
|||||| |||||||||| |||||| ||||| ||||||||| ||||||||||||||| ||||||||||||| |||||| ||||||| ||||||| |
|
|
| T |
9708140 |
agtagaagaagagtttatttgctcttcctcaatatcagaagcatctgatgtgatcataggttcaggttcactgacaatttcagcgatagaggatgatgta |
9708041 |
T |
|
| Q |
213 |
ggttgttgagaatcaagttg |
232 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
9708040 |
ggttgttcagaatcaagttg |
9708021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 107 - 186
Target Start/End: Complemental strand, 22576307 - 22576228
Alignment:
| Q |
107 |
aatcacagtagaggaagagtttaattgctcaacctcagcatcagaagcttctgatgtgatcataaagtcaggttcactga |
186 |
Q |
| |
|
||||| |||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
22576307 |
aatcatagtagaggaagagtttaactgctcatcctcaacatcagaagcttctgatgtgatcataaaatcagattcactga |
22576228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 21693304 - 21693360
Alignment:
| Q |
130 |
attgctcaacctcagcatcagaagcttctgatgtgatcataaagtcaggttcactga |
186 |
Q |
| |
|
|||||||||||||| |||||||| ||| |||||||||||||| |||||||| |||| |
|
|
| T |
21693304 |
attgctcaacctcaacatcagaatctttagatgtgatcataaaatcaggttcgctga |
21693360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 232
Target Start/End: Complemental strand, 13574507 - 13574288
Alignment:
| Q |
20 |
gttgaatagctaggtttgatgatgaaggttggctatttgaggagattggagtttgattgttaagggttgat-------cagaatcagactctataatcac |
112 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||| |||| |||| || ||||||||||||| ||||||||| ||||| ||||||| |||||||| |
|
|
| T |
13574507 |
gttggatagctagaattgatgatgaaggttggctgtttgtggaggttcgagtttgattgtttagggttgatggttgatcagaaccagactccataatcac |
13574408 |
T |
|
| Q |
113 |
agtagaggaagagtttaattgctcaacctcagcatcagaagcttctgatgtgatcataaagtcaggttcactgatggtttcaggaatagagggtgatgta |
212 |
Q |
| |
|
|||||| |||||||||| |||||| ||||| ||||||||| ||||||||||||||| ||||||||||||| |||||| ||||||| ||||||| |
|
|
| T |
13574407 |
agtagaagaagagtttatttgctcttcctcaatatcagaagcatctgatgtgatcataggttcaggttcactgacaatttcagcgatagaggatgatgta |
13574308 |
T |
|
| Q |
213 |
ggttgttgagaatcaagttg |
232 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
13574307 |
ggttgttcagaatcaagttg |
13574288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 19619413 - 19619364
Alignment:
| Q |
135 |
tcaacctcagcatcagaagcttctgatgtgatcataaagtcaggttcact |
184 |
Q |
| |
|
||||||||| |||||||| ||||| ||||||||||||| ||| ||||||| |
|
|
| T |
19619413 |
tcaacctcaccatcagaatcttcttatgtgatcataaaatcatgttcact |
19619364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0315 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0315
Description:
Target: scaffold0315; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 30 - 192
Target Start/End: Original strand, 19687 - 19856
Alignment:
| Q |
30 |
taggtttgatgatgaaggttggctatttgaggagattggagtttgattg----ttaagg---gttgatcagaatcagactctataatcacagtagaggaa |
122 |
Q |
| |
|
|||| |||| |||||||||||| ||||| |||||||| |||||||||| |||| | ||||||||||| |||||| || ||||||||||||| || |
|
|
| T |
19687 |
taggcttgaggatgaaggttggtcatttgtggagattgcagtttgattgctggttaatgaaggttgatcagaaacagactttacaatcacagtagagtaa |
19786 |
T |
|
| Q |
123 |
gagtttaattgctcaacctcagcatcagaagcttctgatgtgatcataaagtcaggttcactgatggttt |
192 |
Q |
| |
|
|||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19787 |
gagtttaactgctcatcctcaacatcagaagcttctgatgtgatcataaagtcaggttcactgacggttt |
19856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 98 - 232
Target Start/End: Original strand, 25772 - 25906
Alignment:
| Q |
98 |
agactctataatcacagtagaggaagagtttaattgctcaacctcagcatcagaagcttctgatgtgatcataaagtcaggttcactgatggtttcagga |
197 |
Q |
| |
|
|||||| |||||||||||||| |||||||||| || ||| ||||| ||| |||||| ||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
25772 |
agactccataatcacagtagaagaagagtttatttcctcttcctcaacattagaagcatctgatgtgatcatagggtcaggtttactgatggtttcagga |
25871 |
T |
|
| Q |
198 |
atagagggtgatgtaggttgttgagaatcaagttg |
232 |
Q |
| |
|
||||| || ||| || ||||| |||| ||||||| |
|
|
| T |
25872 |
atagaagggaatggagtttgttcagaagcaagttg |
25906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0120 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0120
Description:
Target: scaffold0120; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 35 - 192
Target Start/End: Complemental strand, 35345 - 35190
Alignment:
| Q |
35 |
ttgatgatgaaggttggctatttgaggagattggagtttgatt----gtta---agggttgatcagaatcagactctataatcacagtagaggaagagtt |
127 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| ||||||| |||| | ||||||||| || |||||| || |||||||||| |||||||||| |
|
|
| T |
35345 |
ttgatgatgaaggttggctatttgtggaggttggaatttgatttctggttatcgaaggttgatcaaaaacagactttacaatcacagtaaaggaagagtt |
35246 |
T |
|
| Q |
128 |
taattgctcaacctcagcatcagaagcttctgatgtgatcataaagtcaggttcactgatggttt |
192 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
35245 |
taactgctca---------tcagaagcttctgatgtgatcataaagtcaagttcactgacggttt |
35190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0120; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 35 - 192
Target Start/End: Original strand, 43660 - 43815
Alignment:
| Q |
35 |
ttgatgatgaaggttggctatttgaggagattggagtttgatt----gtta---agggttgatcagaatcagactctataatcacagtagaggaagagtt |
127 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| ||||||| |||| | ||||||||| || |||||| || |||||||||| |||||||||| |
|
|
| T |
43660 |
ttgatgatgaaggttggctatttgtggaggttggaatttgatttctggttatcgaaggttgatcaaaaacagactttacaatcacagtaaaggaagagtt |
43759 |
T |
|
| Q |
128 |
taattgctcaacctcagcatcagaagcttctgatgtgatcataaagtcaggttcactgatggttt |
192 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
43760 |
taactgctca---------tcagaagcttctgatgtgatcataaagtcaagttcactgacggttt |
43815 |
T |
|
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Target: scaffold0066 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 59164 - 59108
Alignment:
| Q |
130 |
attgctcaacctcagcatcagaagcttctgatgtgatcataaagtcaggttcactga |
186 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||| |||| ||||||||||||| |
|
|
| T |
59164 |
attgctcaacctcaacatcagaatcttctgatgtgatcgtaaaatcaggttcactga |
59108 |
T |
|
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Target: scaffold0004 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 135 - 186
Target Start/End: Original strand, 449 - 500
Alignment:
| Q |
135 |
tcaacctcagcatcagaagcttctgatgtgatcataaagtcaggttcactga |
186 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
449 |
tcaacctcaacatcagaatcttctgatgtgatcataaaatcaggttcactga |
500 |
T |
|
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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 16190158 - 16190200
Alignment:
| Q |
160 |
atgtgatcataaagtcaggttcactgatggtttcaggaataga |
202 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
16190158 |
atgtgatcataaagtcaggttcactgacgatttcaggaataga |
16190200 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 202
Target Start/End: Original strand, 17261170 - 17261237
Alignment:
| Q |
135 |
tcaacctcagcatcagaagcttctgatgtgatcataaagtcaggttcactgatggtttcaggaataga |
202 |
Q |
| |
|
||||| ||| ||||| || ||||||||||||||||||| ||||||||| ||| ||||||||||||| |
|
|
| T |
17261170 |
tcaacttcatcatcaaaaccttctgatgtgatcataaaatcaggttcattgaaattttcaggaataga |
17261237 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 202
Target Start/End: Complemental strand, 20380726 - 20380659
Alignment:
| Q |
135 |
tcaacctcagcatcagaagcttctgatgtgatcataaagtcaggttcactgatggtttcaggaataga |
202 |
Q |
| |
|
||||| ||| |||||||| ||||||||||||||||||| ||| ||||| ||| ||||||||||||| |
|
|
| T |
20380726 |
tcaacttcatcatcagaaccttctgatgtgatcataaaatcaagttcaatgactttttcaggaataga |
20380659 |
T |
|
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Target: scaffold0334 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0334
Description:
Target: scaffold0334; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 186
Target Start/End: Original strand, 11331 - 11382
Alignment:
| Q |
135 |
tcaacctcagcatcagaagcttctgatgtgatcataaagtcaggttcactga |
186 |
Q |
| |
|
||||||||| | |||||| |||| |||||||||||||| ||||||||||||| |
|
|
| T |
11331 |
tcaacctcatcgtcagaatcttccgatgtgatcataaaatcaggttcactga |
11382 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 26744391 - 26744441
Alignment:
| Q |
174 |
tcaggttcactgatggtttcaggaatagagggtgatgtaggttgttgagaa |
224 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||| |||||||| |||| |
|
|
| T |
26744391 |
tcaggttcagggatggtttcaggaatggagggtgatggaggttgttcagaa |
26744441 |
T |
|
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