View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_268 (Length: 235)
Name: NF11385A_low_268
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_268 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 57 - 218
Target Start/End: Complemental strand, 31069398 - 31069237
Alignment:
| Q |
57 |
gctattatcttcttatttatattaacgaaatgtgttgagatgaatcttgtgatattccttgaccatttttggaagaactgaagcaatttctttcattttg |
156 |
Q |
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| T |
31069398 |
gctattatcttcttatttatattaacgaaatgtgttgagatgaatcttgtgatattccttgaccatttttggaagaactgaagcaatttctttcattttg |
31069299 |
T |
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| Q |
157 |
tcttcggtgttttctatgaaacttgaatcgatattggtgaaatcatcttgatgggtgattgt |
218 |
Q |
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| T |
31069298 |
tcttcggtgttttctatgaaacttgaatcgatattggtgaaatcatcttgatgggtgtttgt |
31069237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 212
Target Start/End: Original strand, 11592990 - 11593109
Alignment:
| Q |
94 |
agatgaatcttgtgatattccttgacc-atttttggaagaactgaagcaatttctttcattttgtcttcggtgttttctatgaaacttgaatcgatattg |
192 |
Q |
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| T |
11592990 |
agatgcatcttgtgaaattccttgacccatgtttggaagaacagaagcagcttctttgattctgtctttggtgttttctatgaaaccagaatccatgttg |
11593089 |
T |
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| Q |
193 |
gtgaaatcatcttgatgggt |
212 |
Q |
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| T |
11593090 |
gtgtaatcttgttgatgggt |
11593109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 212
Target Start/End: Complemental strand, 11645129 - 11645010
Alignment:
| Q |
94 |
agatgaatcttgtgatattccttgacc-atttttggaagaactgaagcaatttctttcattttgtcttcggtgttttctatgaaacttgaatcgatattg |
192 |
Q |
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| T |
11645129 |
agatgcatcttgtgaaattccttgacccatgtttggaagaacagaagcagcttctttgattctgtctttggtgttttctatgaaaccagaatccatgttg |
11645030 |
T |
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| Q |
193 |
gtgaaatcatcttgatgggt |
212 |
Q |
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| T |
11645029 |
gtgtaatcttgttgatgggt |
11645010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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