View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_271 (Length: 233)
Name: NF11385A_low_271
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_271 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 21 - 221
Target Start/End: Original strand, 17433829 - 17434029
Alignment:
| Q |
21 |
tcaacaaggaaaaacctagccatgctttcaaactcttaaaatctctatatggtctcaaacaagcaccaagaaattggtacgagagattgagatattttct |
120 |
Q |
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| T |
17433829 |
tcaacaaggaaaaacctagccatgctttcaaactcttaaaatctctatatggtctcaaacaagcaccaagaaattggtacgagagattgagatattttct |
17433928 |
T |
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| Q |
121 |
aaaagaaaatggtttttctagaggacatattgacttaacacttttcgtaaaattaatctagttaatatgatatgtttattattctagtctatgttgatga |
220 |
Q |
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| T |
17433929 |
aaaagaaaatggtttttctagaggacatattgacttaacacttttcgtaaaattaatctagttaatatgatatgtttattattctagtctatgttgatga |
17434028 |
T |
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| Q |
221 |
t |
221 |
Q |
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| T |
17434029 |
t |
17434029 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 21181534 - 21181622
Alignment:
| Q |
64 |
tctatatggtctcaaacaagcaccaagaaattggtacgagagattgagatattttctaaaagaaaatggtttttctagaggacatattga |
153 |
Q |
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| T |
21181534 |
tctatatggtctcaaacaagcaccaagggcttgatatgagagattgagttcctttttgaaagaaaat-gtttttcaagatgacaaattga |
21181622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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