View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11385A_low_273 (Length: 233)
Name: NF11385A_low_273
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_273 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 29020784 - 29020996
Alignment:
| Q |
18 |
gtttcaaaaatcagatccacactcaactcaggaatgcgattttgattcttgatcaaaccatagcagctaaat-----catgctgaaaactggacagaaaa |
112 |
Q |
| |
|
||||||||||||| || | ||| |||||| |||||| |||||||||||||||||| ||| ||||||||||| | | |||||||||||||||||| |
|
|
| T |
29020784 |
gtttcaaaaatcaaattctcacccaactcgagaatgccattttgattcttgatcaa-ccacagcagctaaattcaatcctactgaaaactggacagaaag |
29020882 |
T |
|
| Q |
113 |
ctccagaactccaagcaagagaaaatatcagattaaaccctacacagcccattggggcgacacaccaatccggaaataccaaggggctactctttgtatt |
212 |
Q |
| |
|
| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29020883 |
cgccataactccaagcaagagaaaatatgagattaaaccctacacagcccattgggtcgacacaccaatccggaaataccaaggggatactctttgtatt |
29020982 |
T |
|
| Q |
213 |
ctccaaacaccaaa |
226 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
29020983 |
ctccaaacaccaaa |
29020996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 23 - 182
Target Start/End: Complemental strand, 28696669 - 28696511
Alignment:
| Q |
23 |
aaaaatcagatccacactcaactcaggaatgcgattttgattcttgatcaaaccatagcagctaaatcatgctgaaaactggacagaaaactccagaact |
122 |
Q |
| |
|
||||||||||||||| | ||||||| |||||| | |||||||||||||||| ||| |||| ||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
28696669 |
aaaaatcagatccactcccaactcaagaatgccactttgattcttgatcaa-ccacagcaactaaatcatgctgaaaaatggacagaaagatccagaact |
28696571 |
T |
|
| Q |
123 |
ccaagcaagagaaaatatcagattaaaccctacacagcccattggggcgacacaccaatc |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
28696570 |
ccaagcaagagaaaatatcagattaaaccctacacagccaattgggtcgacacaccaatc |
28696511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University