View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11385A_low_275 (Length: 232)

Name: NF11385A_low_275
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11385A_low_275
NF11385A_low_275
[»] chr1 (3 HSPs)
chr1 (20-212)||(7386421-7386613)
chr1 (53-189)||(19991215-19991350)
chr1 (106-190)||(19322649-19322733)
[»] chr5 (3 HSPs)
chr5 (77-213)||(4925268-4925404)
chr5 (53-213)||(35205787-35205947)
chr5 (72-213)||(35211203-35211344)
[»] chr3 (3 HSPs)
chr3 (53-211)||(52314493-52314651)
chr3 (53-209)||(53464903-53465059)
chr3 (88-185)||(1995809-1995906)
[»] chr4 (2 HSPs)
chr4 (56-212)||(23563558-23563714)
chr4 (84-212)||(48265287-48265415)
[»] chr2 (2 HSPs)
chr2 (118-214)||(39375508-39375604)
chr2 (21-59)||(39375627-39375665)
[»] chr8 (1 HSPs)
chr8 (97-214)||(40278487-40278604)
[»] chr7 (1 HSPs)
chr7 (90-211)||(45888823-45888944)


Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 20 - 212
Target Start/End: Original strand, 7386421 - 7386613
Alignment:
Q  20 ctattaattaaaagaaataaaactcaaagtattacaaaatctaacaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactact 119  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7386421 ctattaattaaaagaaataaaactcaaagtattacaaaatctgacaattacaggaaaaggaacgtagtaatgcattgctaccatgtataatttaactact 7386520  T
Q  120 caattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctcttag 212  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||  | ||||||||||||||||||    
T  7386521 caattccaaagccaattatccatgatattatgacacaagagcattggttagtgtgataccacccatatggatgggcgatgtgtatgctcttag 7386613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 19991350 - 19991215
Alignment:
Q  53 acaaaatctaacaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatga 152  Q
    |||||||| ||||||| | |||||||||| |||||||| ||||  ||||||| ||||||||||||||||||| ||| |||||||||| ||||| ||||||    
T  19991350 acaaaatc-aacaattgcaggaaaaggaaggtagtaatccattattaccatggatagtttaactactcaatttcaatgccaattatccatgatcttatga 19991252  T
Q  153 cacgagagcattggttagtgtgataccacccatatgg 189  Q
    ||| | ||||||||  |||||||||||||||||||||    
T  19991251 cacaaaagcattgggcagtgtgataccacccatatgg 19991215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 106 - 190
Target Start/End: Complemental strand, 19322733 - 19322649
Alignment:
Q  106 atagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatgga 190  Q
    |||||||||||||||||||| ||||||||||||  ||||||||||||||| ||| | ||||||| ||| ||||||||||||||||    
T  19322733 atagtttaactactcaattctaaagccaattattcatgatattatgacacaagaacgttggttattgtaataccacccatatgga 19322649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 77 - 213
Target Start/End: Original strand, 4925268 - 4925404
Alignment:
Q  77 aggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgat 176  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  4925268 aggaacgtagtaatgcattgttaccatgtatagtttaactactcaattccaaagccaattatccatgatattatgacacaagagcattggttagtgtgat 4925367  T
Q  177 accacccatatggacagacgatgtgtatgctcttagt 213  Q
    ||||||||||||||||||||||| |||||||||||||    
T  4925368 accacccatatggacagacgatgcgtatgctcttagt 4925404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 53 - 213
Target Start/End: Original strand, 35205787 - 35205947
Alignment:
Q  53 acaaaatctaacaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatga 152  Q
    ||||||||  |||||| | |||||||||| | ||||||||||| || ||||| |||||||||| |||||||| ||| |||||||||  ||||| ||||||    
T  35205787 acaaaatcagacaattgcaggaaaaggaaggcagtaatgcattacttccatggatagtttaaccactcaatttcaatgccaattattcatgatcttatga 35205886  T
Q  153 cacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctcttagt 213  Q
    ||| | |||||||| || ||||||||||||||||||  ||| ||||||| |||||||||||    
T  35205887 cacaaaagcattgggtaatgtgataccacccatatgtgcaggcgatgtgcatgctcttagt 35205947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 72 - 213
Target Start/End: Complemental strand, 35211344 - 35211203
Alignment:
Q  72 ggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagt 171  Q
    |||||||||| | ||||||||||| |||||||| |||||||||| |||||||| ||| |||||||||  ||||| ||||||||| | |||||||| || |    
T  35211344 ggaaaaggaaggcagtaatgcattactaccatggatagtttaaccactcaatttcaatgccaattattcatgatcttatgacacaaaagcattgggtaat 35211245  T
Q  172 gtgataccacccatatggacagacgatgtgtatgctcttagt 213  Q
    |||||||||||||||||  |||  |||||| |||||||||||    
T  35211244 gtgataccacccatatgtgcaggtgatgtgcatgctcttagt 35211203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 53 - 211
Target Start/End: Original strand, 52314493 - 52314651
Alignment:
Q  53 acaaaatctaacaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatga 152  Q
    ||||||||  |||||| | |||||||||| ||||||||||||| |||||||| ||||||||||||||||||| ||| |||||||||  ||||| ||||||    
T  52314493 acaaaatcagacaattgcaggaaaaggaaggtagtaatgcattactaccatggatagtttaactactcaatttcaatgccaattattcatgatcttatga 52314592  T
Q  153 cacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctctta 211  Q
    ||| | ||||||||  | ||||||||||||||||||  ||| ||||||| |||||||||    
T  52314593 cacaaaagcattgggcaatgtgataccacccatatgtgcaggcgatgtgcatgctctta 52314651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 53 - 209
Target Start/End: Original strand, 53464903 - 53465059
Alignment:
Q  53 acaaaatctaacaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatga 152  Q
    ||||||||  |||||| | |||||||||| ||||||||||||| |||||||| ||||||||||||||||||| ||| |||||||||  ||||| ||||||    
T  53464903 acaaaatcagacaattgcaggaaaaggaaggtagtaatgcattactaccatggatagtttaactactcaatttcaatgccaattattcatgatcttatga 53465002  T
Q  153 cacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctct 209  Q
    ||| | ||||||||  | ||||||||||||||||||  ||| ||||||| |||||||    
T  53465003 cacaaaagcattgggcaatgtgataccacccatatgtgcaggcgatgtgcatgctct 53465059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 185
Target Start/End: Original strand, 1995809 - 1995906
Alignment:
Q  88 aatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccat 185  Q
    ||||||||||||| |||  | ||||| |||||||  ||||| |||||||||| | ||||||||||| | || ||||| || |||||  ||||||||||    
T  1995809 aatgcattgctactatggttggtttagctactcatatccaatgccaattatccaagatattatgactcaagtgcattagtcagtgtattaccacccat 1995906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 56 - 212
Target Start/End: Original strand, 23563558 - 23563714
Alignment:
Q  56 aaatctaacaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacac 155  Q
    |||||| |||||| | |||||||||| ||||||||||||| | |||||| ||||||||||||||||||| ||| | |||||||| ||||| |||||||||    
T  23563558 aaatctgacaattgcaggaaaaggaaggtagtaatgcattaccaccatggatagtttaactactcaatttcaatgtcaattatccatgatcttatgacac 23563657  T
Q  156 gagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctcttag 212  Q
     | ||||||||  |||||||||||||||||||   ||| ||||||| ||||||||||    
T  23563658 aaaagcattgggcagtgtgataccacccatatatgcagccgatgtgcatgctcttag 23563714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 84 - 212
Target Start/End: Original strand, 48265287 - 48265415
Alignment:
Q  84 tagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccaccc 183  Q
    |||||||||||| |||||||| ||||||||||||||||||| ||| |||||||||| ||||| ||||||||| | ||||||||  |||||||||||||||    
T  48265287 tagtaatgcattactaccatggatagtttaactactcaatttcaatgccaattatccatgatcttatgacacaaaagcattggacagtgtgataccaccc 48265386  T
Q  184 atatggacagacgatgtgtatgctcttag 212  Q
    |||||  ||| ||||||| ||| ||||||    
T  48265387 atatgtgcaggcgatgtgcatgttcttag 48265415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 118 - 214
Target Start/End: Complemental strand, 39375604 - 39375508
Alignment:
Q  118 ctcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctcttagtg 214  Q
    |||||||||||||||||||||| ||||||||||||||| |||| |||||||||| ||||||||||||||||||||| | ||||||||||||||||||    
T  39375604 ctcaattccaaagccaattatccatgatattatgacacaagagtattggttagtatgataccacccatatggacaggcaatgtgtatgctcttagtg 39375508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 39375665 - 39375627
Alignment:
Q  21 tattaattaaaagaaataaaactcaaagtattacaaaat 59  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  39375665 tattaattaaaagaaataaaacttaaagtattacaaaat 39375627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 97 - 214
Target Start/End: Complemental strand, 40278604 - 40278487
Alignment:
Q  97 ctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatggacagacg 196  Q
    |||||||| ||||||||||||||||||| ||| | |||||||| ||||| ||||||||| | ||||||||  ||||||||||||||||||||  ||| ||    
T  40278604 ctaccatggatagtttaactactcaatttcaatgtcaattatccatgattttatgacacaaaagcattggccagtgtgataccacccatatgtgcaggcg 40278505  T
Q  197 atgtgtatgctcttagtg 214  Q
    ||||||||||||| ||||    
T  40278504 atgtgtatgctctaagtg 40278487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 211
Target Start/End: Original strand, 45888823 - 45888944
Alignment:
Q  90 tgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatgg 189  Q
    |||||||| || ||| ||| |||| |||||||  ||||| |||||||||| | | || |||||||| | ||||||||||| |||  ||||||| || | |    
T  45888823 tgcattgcaactatggataatttagctactcatatccaatgccaattatccaagttactatgacacaaaagcattggttaatgtattaccacctattttg 45888922  T
Q  190 acagacgatgtgtatgctctta 211  Q
    || |||||||||||||||||||    
T  45888923 accgacgatgtgtatgctctta 45888944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University