View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_279 (Length: 231)
Name: NF11385A_low_279
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_279 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 1968757 - 1968944
Alignment:
| Q |
19 |
agaaactaaccaacaactaannnnnnncaaatgtaaagttttcacctactgttataaaagattatggtatctatataaatgaattaacaattatcaaatt |
118 |
Q |
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| T |
1968757 |
agaaactaaccaacaactaatttttttcaaatgtaaagttttcacccactattataaaagattatggtatctatataaatgaattaacaattatcaaatt |
1968856 |
T |
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| Q |
119 |
aattgagatcctatattacgatttttaatatgtcacctgtccttagaatttcccattctattcttatgattccatattatttgtttct |
206 |
Q |
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| T |
1968857 |
aattgagatcctatattacgatttttaatatgtcacctgaccttggaatttcccattctattcttatgattccatattatttgtttct |
1968944 |
T |
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