View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11385A_low_284 (Length: 230)

Name: NF11385A_low_284
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11385A_low_284
NF11385A_low_284
[»] chr4 (16 HSPs)
chr4 (4-230)||(26417159-26417385)
chr4 (7-144)||(34483539-34483689)
chr4 (6-79)||(29628030-29628103)
chr4 (4-81)||(54998093-54998170)
chr4 (14-79)||(37274884-37274949)
chr4 (6-65)||(35118723-35118783)
chr4 (182-230)||(36219224-36219272)
chr4 (7-79)||(258363-258436)
chr4 (4-61)||(32212808-32212865)
chr4 (14-51)||(36219042-36219079)
chr4 (20-79)||(6078011-6078069)
chr4 (4-55)||(25479660-25479711)
chr4 (4-79)||(45047222-45047296)
chr4 (4-79)||(8757331-8757405)
chr4 (172-219)||(34483465-34483512)
chr4 (20-61)||(1586413-1586454)
[»] chr3 (15 HSPs)
chr3 (17-155)||(50596084-50596222)
chr3 (4-80)||(50345893-50345970)
chr3 (6-79)||(35539071-35539145)
chr3 (6-79)||(38138328-38138402)
chr3 (6-79)||(25926491-25926564)
chr3 (6-67)||(31720266-31720328)
chr3 (4-143)||(21079883-21080021)
chr3 (4-71)||(17378660-17378728)
chr3 (172-230)||(38138154-38138212)
chr3 (172-226)||(25926334-25926388)
chr3 (4-79)||(7885903-7885978)
chr3 (4-57)||(377046-377100)
chr3 (172-206)||(7886096-7886130)
chr3 (172-230)||(50346062-50346120)
chr3 (6-61)||(24744522-24744578)
[»] chr5 (15 HSPs)
chr5 (7-97)||(8681435-8681526)
chr5 (14-79)||(40976359-40976424)
chr5 (8-79)||(26148818-26148889)
chr5 (14-81)||(25768112-25768179)
chr5 (22-79)||(38956762-38956819)
chr5 (6-67)||(13417371-13417433)
chr5 (4-65)||(4942530-4942592)
chr5 (172-230)||(13417186-13417244)
chr5 (172-219)||(25768294-25768341)
chr5 (172-210)||(8680484-8680522)
chr5 (172-213)||(10933616-10933657)
chr5 (22-61)||(30471703-30471742)
chr5 (4-79)||(36974235-36974308)
chr5 (172-230)||(4277325-4277383)
chr5 (172-230)||(37194387-37194445)
[»] chr1 (22 HSPs)
chr1 (4-79)||(51244187-51244263)
chr1 (17-79)||(42488953-42489015)
chr1 (4-76)||(5827480-5827553)
chr1 (4-76)||(3582268-3582340)
chr1 (4-79)||(7712319-7712394)
chr1 (6-73)||(35615602-35615670)
chr1 (22-72)||(30335841-30335891)
chr1 (5-79)||(5041061-5041135)
chr1 (18-71)||(44240811-44240864)
chr1 (172-230)||(5827671-5827729)
chr1 (14-56)||(33259558-33259600)
chr1 (14-56)||(33279717-33279759)
chr1 (4-61)||(37583161-37583218)
chr1 (14-57)||(1774866-1774909)
chr1 (172-214)||(1775036-1775078)
chr1 (172-230)||(30335642-30335700)
chr1 (4-61)||(33780661-33780719)
chr1 (4-61)||(42400956-42401014)
chr1 (172-230)||(43177770-43177828)
chr1 (177-230)||(33603375-33603428)
chr1 (22-66)||(33603559-33603603)
chr1 (83-155)||(51244090-51244162)
[»] chr8 (14 HSPs)
chr8 (6-81)||(18806934-18807009)
chr8 (6-76)||(10287980-10288050)
chr8 (14-80)||(41123229-41123295)
chr8 (6-76)||(7573190-7573261)
chr8 (6-79)||(34717691-34717765)
chr8 (174-230)||(10288172-10288228)
chr8 (4-56)||(33574616-33574668)
chr8 (25-79)||(22324776-22324830)
chr8 (176-230)||(18807126-18807180)
chr8 (172-214)||(29416747-29416789)
chr8 (22-72)||(37187453-37187503)
chr8 (172-230)||(14728845-14728903)
chr8 (172-230)||(26705701-26705759)
chr8 (91-143)||(7573111-7573163)
[»] chr2 (8 HSPs)
chr2 (4-79)||(20683293-20683369)
chr2 (6-79)||(11512020-11512094)
chr2 (4-79)||(39445801-39445875)
chr2 (172-230)||(20683480-20683538)
chr2 (77-155)||(11915975-11916053)
chr2 (172-230)||(43302429-43302487)
chr2 (172-230)||(11511847-11511905)
chr2 (182-230)||(32414669-32414717)
[»] chr7 (18 HSPs)
chr7 (6-79)||(33882000-33882073)
chr7 (4-68)||(37503837-37503902)
chr7 (6-77)||(958102-958173)
chr7 (6-80)||(31386982-31387056)
chr7 (14-76)||(44238107-44238169)
chr7 (6-66)||(32443962-32444022)
chr7 (4-76)||(33326513-33326585)
chr7 (6-76)||(44484093-44484164)
chr7 (4-61)||(42710605-42710662)
chr7 (4-79)||(42988251-42988325)
chr7 (172-219)||(44237941-44237988)
chr7 (176-229)||(25795750-25795803)
chr7 (172-214)||(33882189-33882231)
chr7 (4-61)||(17603934-17603991)
chr7 (174-207)||(22074402-22074435)
chr7 (118-155)||(30224770-30224807)
chr7 (172-225)||(37504017-37504070)
chr7 (23-79)||(25795924-25795979)
[»] chr6 (5 HSPs)
chr6 (8-75)||(30250260-30250326)
chr6 (5-64)||(31632436-31632496)
chr6 (172-230)||(379093-379151)
chr6 (185-230)||(4405616-4405661)
chr6 (4-79)||(33099603-33099678)
[»] scaffold0067 (1 HSPs)
scaffold0067 (20-61)||(226-267)


Alignment Details
Target: chr4 (Bit Score: 123; Significance: 2e-63; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 4 - 230
Target Start/End: Original strand, 26417159 - 26417385
Alignment:
Q  4 tcacttaagaccccaatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtttttgttatcggtggaacccatttatatctt 103  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  26417159 tcacttaagaccccaatcttaagtgaaccccacaccacttttcaataaaataatcattatttgagttgtttttgttatcgatgggacccatttatatctt 26417258  T
Q  104 ttggtatatgatcaccattagaatggttgagtacctattaggtaccattattnnnnnnnnnnnnnnnntgatgtgtcaatgtgagacccgtttaagacct 203  Q
    ||| |||| ||||| |||| || |||||||||||||||||||||||||||||                |||||||| ||||||||||||||||| ||| |    
T  26417259 ttgatataggatcaacattggagtggttgagtacctattaggtaccattattaaaaaataataaaaaatgatgtgttaatgtgagacccgtttatgacat 26417358  T
Q  204 caaatgtgaggatctctattgtagatg 230  Q
    ||||| |||||||||| ||||| ||||    
T  26417359 caaatatgaggatctccattgtggatg 26417385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 7 - 144
Target Start/End: Complemental strand, 34483689 - 34483539
Alignment:
Q  7 cttaagaccc-caatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgttttt------------gttatcggtggaaccca 93  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||| ||||| |||||    
T  34483689 cttaagaccctcaatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtttttcattaataaatagttattggtgggaccca 34483590  T
Q  94 tttatatcttttggtatatgatcaccattagaatggttgagtacctattag 144  Q
    |||| |  ||||| || |||||||||||| || ||||||||||||||||||    
T  34483589 tttagacattttgatagatgatcaccattggagtggttgagtacctattag 34483539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 29628103 - 29628030
Alignment:
Q  6 acttaagaccccaatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtttttgtt 79  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  29628103 acttaagaccccaattttaagtggaccccacaccacttttcaataaaataattattatttgagttgcttttgtt 29628030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 54998093 - 54998170
Alignment:
Q  4 tcacttaagaccccaatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtttttgttat 81  Q
    ||||||||||||  ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  54998093 tcacttaagaccttaatcttaagtggaacccacaccaattttcaataaaataatcattatttgagttgtttttgttat 54998170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 37274949 - 37274884
Alignment:
Q  14 ccccaatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtttttgtt 79  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||| ||||    
T  37274949 ccccaatcttaagtggatcccacatcacttttcaataaaataatcattatttgaattgtttatgtt 37274884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 35118783 - 35118723
Alignment:
Q  6 acttaagaccccaa-tcttaagtggaccccacaccacttttcaataaaataatcattattt 65  Q
    |||||||||| ||| | |||||||||||||||||||||||| |||||||||||||||||||    
T  35118783 acttaagacctcaaatattaagtggaccccacaccactttttaataaaataatcattattt 35118723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 36219224 - 36219272
Alignment:
Q  182 atgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatg 230  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  36219224 atgtgagacccgtttaagacctcaaatgtgagggtctccattgtagatg 36219272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 258436 - 258363
Alignment:
Q  7 cttaagaccc-caatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtttttgtt 79  Q
    |||||||||| |||||||||||||| ||||||  | |||||||||||||||| ||||||||||||  |||||||    
T  258436 cttaagaccctcaatcttaagtggatcccacaaaatttttcaataaaataattattatttgagttacttttgtt 258363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 32212865 - 32212808
Alignment:
Q  4 tcacttaagaccccaatcttaagtggaccccacaccacttttcaataaaataatcatt 61  Q
    |||||||||||| || |||||||| |||| |||||||||||| |||||||||||||||    
T  32212865 tcacttaagacctcattcttaagtagacctcacaccactttttaataaaataatcatt 32212808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 36219042 - 36219079
Alignment:
Q  14 ccccaatcttaagtggaccccacaccacttttcaataa 51  Q
    ||||||||||||||||||||||||||||||||||||||    
T  36219042 ccccaatcttaagtggaccccacaccacttttcaataa 36219079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 6078069 - 6078011
Alignment:
Q  20 tcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtttttgtt 79  Q
    ||||||||||||| |||| ||||||| |||||||||||||||  ||||||||||||||||    
T  6078069 tcttaagtggacctcacaacactttttaataaaataatcatt-gttgagttgtttttgtt 6078011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 25479660 - 25479711
Alignment:
Q  4 tcacttaagaccccaatcttaagtggaccccacaccacttttcaataaaata 55  Q
    ||||||||||||||| ||||||||||| | |||||||||||| |||||||||    
T  25479660 tcacttaagaccccattcttaagtggatctcacaccactttttaataaaata 25479711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 45047296 - 45047222
Alignment:
Q  4 tcacttaagaccccaatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtttttgtt 79  Q
    |||||||||||| || |||||||||| |||||||| || ||| ||||||||||||||| ||| |||| ||||||||    
T  45047296 tcacttaagacctcattcttaagtgggccccacacaacattttaataaaataatcattgttt-agttatttttgtt 45047222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 8757331 - 8757405
Alignment:
Q  4 tcacttaagaccccaatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtttttgtt 79  Q
    |||||||||||| || |||||| || | | |||||||||||| |||||||||||||||  || |||||||||||||    
T  8757331 tcacttaagacctcattcttaactgaatctcacaccactttttaataaaataatcattggtt-agttgtttttgtt 8757405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 34483512 - 34483465
Alignment:
Q  172 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctc 219  Q
    ||||||||| |||||| |||| ||||||||||||||||||||| ||||    
T  34483512 tgatgtgtccatgtgaaacccatttaagacctcaaatgtgagggtctc 34483465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 1586413 - 1586454
Alignment:
Q  20 tcttaagtggaccccacaccacttttcaataaaataatcatt 61  Q
    ||||||||||||||||||| | |||| |||||||||||||||    
T  1586413 tcttaagtggaccccacacaaatttttaataaaataatcatt 1586454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 7e-42; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 17 - 155
Target Start/End: Original strand, 50596084 - 50596222
Alignment:
Q  17 caatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtttttgttatcggtggaacccatttatatcttttggtatatgatc 116  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| | |||||||||||||||| || | ||||    
T  50596084 caatcttaagtggaccctacaccacttttcaataaaataatcattatttgagttgcttttgttattggtgggatccatttatatcttttgatagaagatc 50596183  T
Q  117 accattagaatggttgagtacctattaggtaccattatt 155  Q
     | ||| || |||||||||||||||||||||| ||||||    
T  50596184 tctatttgagtggttgagtacctattaggtactattatt 50596222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 50345893 - 50345970
Alignment:
Q  4 tcacttaagacc-ccaatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtttttgtta 80  Q
    |||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  50345893 tcacttaagacctccaatcttaagtggtccccacaccactttttaataaaataatcattatttgagttgtttttgtta 50345970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 35539145 - 35539071
Alignment:
Q  6 acttaagacccc-aatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtttttgtt 79  Q
    |||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35539145 acttaaaacccctaatcttaagtggaccccacaccacttttaaataaaataatcattatttgagttgtttttgtt 35539071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 38138402 - 38138328
Alignment:
Q  6 acttaagacccc-aatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtttttgtt 79  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  38138402 acttaagacccccaatcttaaatggaccccacaccacttttcaataaaataataattatttgagttgtttttgtt 38138328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 25926564 - 25926491
Alignment:
Q  6 acttaagaccccaa-tcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtttttgtt 79  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  25926564 acttaagaccccaaatcttaagtggaccccacaccacttttcaat-aaataatcattatttgagttatttttgtt 25926491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 31720328 - 31720266
Alignment:
Q  6 acttaagacccc-aatcttaagtggaccccacaccacttttcaataaaataatcattatttga 67  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31720328 acttaagacccccaatcttaagtggaccccacaccactttttaataaaataatcattatttga 31720266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 21079883 - 21080021
Alignment:
Q  4 tcacttaagaccccaa-tcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtttttgttatcggtggaacccatttatatct 102  Q
    ||||||||||| |||| ||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||| | | ||| | ||||||| |  |    
T  21079883 tcacttaagacaccaaatcttaagtggatcc-acaccacttttcaataaaataatcatt-tttgagttgtttttgttgttgttgggatccatttagacgt 21079980  T
Q  103 tttggtatatgatcaccattagaatggttgagtacctatta 143  Q
    |||| || |||||| | |||  | |||||||||||||||||    
T  21079981 tttgatagatgatctctattgaagtggttgagtacctatta 21080021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 17378728 - 17378660
Alignment:
Q  4 tcacttaagacc-ccaatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttg 71  Q
    |||||||||||| ||| |||||||| ||||||||| ||||||| |||||||||||||||||||||||||    
T  17378728 tcacttaagacctccattcttaagtagaccccacatcacttttaaataaaataatcattatttgagttg 17378660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 38138212 - 38138154
Alignment:
Q  172 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatg 230  Q
    ||||||||| || |||||||||||||||||||||||||||||| |||| ||||| ||||    
T  38138212 tgatgtgtccatatgagacccgtttaagacctcaaatgtgagggtctccattgtggatg 38138154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 25926388 - 25926334
Alignment:
Q  172 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgta 226  Q
    ||||| ||| ||||| ||||||||||||||||||||||||||| |||| ||||||    
T  25926388 tgatgagtccatgtgggacccgtttaagacctcaaatgtgagggtctcgattgta 25926334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 7885903 - 7885978
Alignment:
Q  4 tcacttaagacc-ccaatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtttttgtt 79  Q
    |||||||||||| ||| ||||||||||| ||||||| |||||| ||||||||||| |||  |||||||| |||||||    
T  7885903 tcacttaagacctccattcttaagtggatcccacacaactttttaataaaataataatt-gttgagttgcttttgtt 7885978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 377046 - 377100
Alignment:
Q  4 tcacttaagaccc-caatcttaagtggaccccacaccacttttcaataaaataat 57  Q
    ||||||||||| | || ||||||||||||| |||||||||||| |||||||||||    
T  377046 tcacttaagactctcattcttaagtggacctcacaccactttttaataaaataat 377100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Original strand, 7886096 - 7886130
Alignment:
Q  172 tgatgtgtcaatgtgagacccgtttaagacctcaa 206  Q
    ||||||||| |||||||||||||||||||||||||    
T  7886096 tgatgtgtctatgtgagacccgtttaagacctcaa 7886130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 50346062 - 50346120
Alignment:
Q  172 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatg 230  Q
    ||||||||  |||| |||| ||||||||||||||||||||||| |||| ||||| ||||    
T  50346062 tgatgtgttcatgtaagactcgtttaagacctcaaatgtgagggtctccattgtggatg 50346120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 24744578 - 24744522
Alignment:
Q  6 acttaagacc-ccaatcttaagtggaccccacaccacttttcaataaaataatcatt 61  Q
    |||||||||| ||| ||||||||||| ||||||| |||||| | |||||||||||||    
T  24744578 acttaagacctccattcttaagtggatcccacactactttttattaaaataatcatt 24744522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 8681526 - 8681435
Alignment:
Q  7 cttaagaccc-caatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtttttgttatcggtggaacccattta 97  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| | |||||||    
T  8681526 cttaagaccctcaatcttaagtggaccccacaccatttttcaataaaataatcattatttgagttgtttttgttattggtgggatccattta 8681435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 40976359 - 40976424
Alignment:
Q  14 ccccaatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtttttgtt 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40976359 ccccaatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtttttgtt 40976424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 26148818 - 26148889
Alignment:
Q  8 ttaagaccccaatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtttttgtt 79  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  26148818 ttaagatcccaatcttaagtggaccccacaccacttttcaataaaataataattatttgagttgtttttgtt 26148889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 25768112 - 25768179
Alignment:
Q  14 ccccaatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtttttgttat 81  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  25768112 ccccaatcttaagtggaccccacaccacttttcaataaaataattattatttgaattgtttttgttat 25768179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 38956762 - 38956819
Alignment:
Q  22 ttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtttttgtt 79  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38956762 ttaagtagaccccacaccacttttcaataaaataatcattatttgagttgtttttgtt 38956819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 13417433 - 13417371
Alignment:
Q  6 acttaagacccc-aatcttaagtggaccccacaccacttttcaataaaataatcattatttga 67  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13417433 acttaagacccccaatgttaagtggaccccacaccacttttcaataaaataatcattatttga 13417371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 4942592 - 4942530
Alignment:
Q  4 tcacttaagaccc-caatcttaagtggaccccacaccacttttcaataaaataatcattattt 65  Q
    ||||||||||||| || ||||||||||||||||||| |||||| |||||||||||||||||||    
T  4942592 tcacttaagaccctcattcttaagtggaccccacacaactttttaataaaataatcattattt 4942530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 13417244 - 13417186
Alignment:
Q  172 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatg 230  Q
    ||||||||| |||||  ||||||||||||||||||||||||||||||| ||||||||||    
T  13417244 tgatgtgtccatgtggaacccgtttaagacctcaaatgtgaggatctccattgtagatg 13417186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 25768294 - 25768341
Alignment:
Q  172 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctc 219  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  25768294 tgatgtgtctatgtgggacccgtttaagacctcaaatgtgaggatctc 25768341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 8680522 - 8680484
Alignment:
Q  172 tgatgtgtcaatgtgagacccgtttaagacctcaaatgt 210  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  8680522 tgatgtgtccatgtgagacccgtttaagacctcaaatgt 8680484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 10933616 - 10933657
Alignment:
Q  172 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgag 213  Q
    ||||||||| |||||| |||||||||||||||||||||||||    
T  10933616 tgatgtgtccatgtgatacccgtttaagacctcaaatgtgag 10933657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 30471703 - 30471742
Alignment:
Q  22 ttaagtggaccccacaccacttttcaataaaataatcatt 61  Q
    ||||||||||||||||| |||||| |||||||||||||||    
T  30471703 ttaagtggaccccacacaactttttaataaaataatcatt 30471742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 36974308 - 36974235
Alignment:
Q  4 tcacttaagaccccaatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtttttgtt 79  Q
    ||||||||||||||| |||||||| || |||||||||||||| | ||||||||| |||  |||||||| |||||||    
T  36974308 tcacttaagaccccattcttaagt-gatcccacaccactttttattaaaataataatt-gttgagttgcttttgtt 36974235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 4277383 - 4277325
Alignment:
Q  172 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatg 230  Q
    |||||||||||| |||||||| ||||||||||||||  ||||  |||| ||||||||||    
T  4277383 tgatgtgtcaatatgagacccatttaagacctcaaagatgagagtctccattgtagatg 4277325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 37194387 - 37194445
Alignment:
Q  172 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatg 230  Q
    ||||||||||||||||||||| ||||| ||||||||  |||| ||||| ||||| ||||    
T  37194387 tgatgtgtcaatgtgagacccatttaaaacctcaaagatgagaatctccattgtggatg 37194445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 51244263 - 51244187
Alignment:
Q  4 tcacttaagaccc-caatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtttttgtt 79  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  51244263 tcacttaagatcctcaatcttaagtggaccccacaccacttttcaataaaataatcattatttgaattgtttttgtt 51244187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 42488953 - 42489015
Alignment:
Q  17 caatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtttttgtt 79  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  42488953 caatcttaagtgaaccccacaccacttttcaataaaataatcattatttgagttgcttttgtt 42489015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 5827480 - 5827553
Alignment:
Q  4 tcacttaagaccccaa-tcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgttttt 76  Q
    |||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||    
T  5827480 tcacttaagaccccaaatcttaagtggaccccgaaccacttttcaataaaataatcattatttgagttgctttt 5827553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 3582268 - 3582340
Alignment:
Q  4 tcacttaagaccccaatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgttttt 76  Q
    |||| ||||||| ||||||||||| ||||||||| ||||||||||||||||||| ||||||| ||||||||||    
T  3582268 tcacataagacctcaatcttaagtagaccccacatcacttttcaataaaataattattatttaagttgttttt 3582340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 7712394 - 7712319
Alignment:
Q  4 tcacttaagaccccaat-cttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtttttgtt 79  Q
    ||||||||||||||||| ||||||||||| |||||| |||||| |||||||||||||||| ||||||||||||||||    
T  7712394 tcacttaagaccccaattcttaagtggactccacacaacttttaaataaaataatcatta-ttgagttgtttttgtt 7712319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 35615670 - 35615602
Alignment:
Q  6 acttaagaccc-caatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtt 73  Q
    ||||||||||| || | ||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  35615670 acttaagaccctcatttttaagtggatcccacaccacttttaaataaaataatcattatttgagttgtt 35615602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 30335891 - 30335841
Alignment:
Q  22 ttaagtggaccccacaccacttttcaataaaataatcattatttgagttgt 72  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  30335891 ttaagtggatcccacaccacttttaaataaaataatcattatttgagttgt 30335841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 5041135 - 5041061
Alignment:
Q  5 cacttaagaccccaat-cttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtttttgtt 79  Q
    |||||||||||||||| |||| ||||| ||||| |||||||| |||||||||||||||  ||||||||||||||||    
T  5041135 cacttaagaccccaattcttacgtggatcccactccactttttaataaaataatcatt-gttgagttgtttttgtt 5041061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 44240864 - 44240811
Alignment:
Q  18 aatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttg 71  Q
    |||||||||||||| ||||||||||||| |||||||||||  ||||||||||||    
T  44240864 aatcttaagtggactccacaccactttttaataaaataattgttatttgagttg 44240811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 5827671 - 5827729
Alignment:
Q  172 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatg 230  Q
    ||||||||| ||||||||||||||||| ||||||||||||||  |||| ||||| ||||    
T  5827671 tgatgtgtccatgtgagacccgtttaaaacctcaaatgtgagagtctccattgtggatg 5827729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 33259600 - 33259558
Alignment:
Q  14 ccccaatcttaagtggaccccacaccacttttcaataaaataa 56  Q
    ||||| |||||||||||||||||||||||||| ||||||||||    
T  33259600 ccccattcttaagtggaccccacaccactttttaataaaataa 33259558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 33279759 - 33279717
Alignment:
Q  14 ccccaatcttaagtggaccccacaccacttttcaataaaataa 56  Q
    ||||| |||||||||||||||||||||||||| ||||||||||    
T  33279759 ccccattcttaagtggaccccacaccactttttaataaaataa 33279717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 37583218 - 37583161
Alignment:
Q  4 tcacttaagaccccaatcttaagtggaccccacaccacttttcaataaaataatcatt 61  Q
    ||||||||||||||| | ||||||||||| ||||| |||||| | |||||||||||||    
T  37583218 tcacttaagaccccatttttaagtggacctcacactactttttattaaaataatcatt 37583161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 1774866 - 1774909
Alignment:
Q  14 ccccaatcttaagtggaccccacaccacttttcaataaaataat 57  Q
    |||||||||||||| |||||||| ||||||||||||||| ||||    
T  1774866 ccccaatcttaagttgaccccaccccacttttcaataaattaat 1774909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 1775036 - 1775078
Alignment:
Q  172 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgagg 214  Q
    |||||| || ||||| |||||||||||||||||||||||||||    
T  1775036 tgatgtttccatgtgtgacccgtttaagacctcaaatgtgagg 1775078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 30335700 - 30335642
Alignment:
Q  172 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatg 230  Q
    |||||||||||||||| ||| |||||||||||||||  ||||| |||| ||||| ||||    
T  30335700 tgatgtgtcaatgtgaaacctgtttaagacctcaaagttgagggtctccattgtggatg 30335642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 33780719 - 33780661
Alignment:
Q  4 tcacttaagacc-ccaatcttaagtggaccccacaccacttttcaataaaataatcatt 61  Q
    |||||||||||  ||| |||||||||||| |||||| |||||||| |||||||||||||    
T  33780719 tcacttaagacttccattcttaagtggactccacactacttttcattaaaataatcatt 33780661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 42400956 - 42401014
Alignment:
Q  4 tcacttaagaccccaat-cttaagtggaccccacaccacttttcaataaaataatcatt 61  Q
    |||||||||||||  || |||||||||||||||||| |||||| | |||||||||||||    
T  42400956 tcacttaagacccttattcttaagtggaccccacactactttttattaaaataatcatt 42401014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 43177828 - 43177770
Alignment:
Q  172 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatg 230  Q
    |||| |||| ||||| || |||||||||||||||||||||||| |||| ||||| ||||    
T  43177828 tgatctgtccatgtgggatccgtttaagacctcaaatgtgagggtctccattgtggatg 43177770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 33603428 - 33603375
Alignment:
Q  177 tgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatg 230  Q
    |||| |||||||| |||||||||||||||||  ||| |||||| ||||||||||    
T  33603428 tgtctatgtgagatccgtttaagacctcaaaattgaagatctcgattgtagatg 33603375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 33603603 - 33603559
Alignment:
Q  22 ttaagtggaccccacaccacttttcaataaaataatcattatttg 66  Q
    ||||||||||| |||| ||||||| ||||||||||||||| ||||    
T  33603603 ttaagtggacctcacatcactttttaataaaataatcattgtttg 33603559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 51244162 - 51244090
Alignment:
Q  83 ggtggaacccatttatatcttttggtatatgatcaccattagaatggttgagtacctattaggtaccattatt 155  Q
    ||||| ||||||||| |  ||||| || |||||| | ||| |||| |||||||||||||||||||| ||||||    
T  51244162 ggtgggacccatttaaacattttgatagatgatctcgattggaatagttgagtacctattaggtactattatt 51244090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 81
Target Start/End: Original strand, 18806934 - 18807009
Alignment:
Q  6 acttaagaccccaatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtttttgttat 81  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||    
T  18806934 acttaagaccctaatcttaagtggaccccataccacttttcaataaaataattattatttgagttgtttttcttat 18807009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 10287980 - 10288050
Alignment:
Q  6 acttaagaccccaatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgttttt 76  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  10287980 acttaagaccccaatcttaaatggaccccacaccacttttcaataaaataattattatttgagttgctttt 10288050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 41123229 - 41123295
Alignment:
Q  14 ccccaatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtttttgtta 80  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  41123229 ccccaatcttaagtggactccacaccacttttcaataaaataatcattatttgagttgattttgtta 41123295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 7573261 - 7573190
Alignment:
Q  6 acttaagacccc-aatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgttttt 76  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  7573261 acttaagacccccaatcttaagtggaccccacactacttttcaataaaataatcattatttgagttgctttt 7573190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 34717691 - 34717765
Alignment:
Q  6 acttaagaccccaa-tcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtttttgtt 79  Q
    ||||||||||| || |||||||||||| |||||||||||| ||||||||||||  ||||||||||||||||||||    
T  34717691 acttaagaccctaaatcttaagtggactccacaccactttacaataaaataattcttatttgagttgtttttgtt 34717765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 10288172 - 10288228
Alignment:
Q  174 atgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatg 230  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  10288172 atgtgtccatgtgagacccgtttaagacctcaaatgtgagggtctttattgtagatg 10288228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 33574616 - 33574668
Alignment:
Q  4 tcacttaagaccccaatcttaagtggaccccacaccacttttcaataaaataa 56  Q
    |||||||||||| |||| |||||||||||| ||||||||||||||||||||||    
T  33574616 tcacttaagacctcaatattaagtggaccctacaccacttttcaataaaataa 33574668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 22324776 - 22324830
Alignment:
Q  25 agtggaccccacaccacttttcaataaaataatcattatttgagttgtttttgtt 79  Q
    |||||||||||||||| |||| ||||||||||| ||||||||||||| |||||||    
T  22324776 agtggaccccacaccagtttttaataaaataattattatttgagttgattttgtt 22324830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 18807126 - 18807180
Alignment:
Q  176 gtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatg 230  Q
    ||||| ||||||||||||||||| ||||||||||||||| |||| ||||| ||||    
T  18807126 gtgtccatgtgagacccgtttaaaacctcaaatgtgagggtctccattgtggatg 18807180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 29416747 - 29416789
Alignment:
Q  172 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgagg 214  Q
    ||||||||| |||| ||||||||||||||||||||||||||||    
T  29416747 tgatgtgtctatgtaagacccgtttaagacctcaaatgtgagg 29416789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 37187453 - 37187503
Alignment:
Q  22 ttaagtggaccccacaccacttttcaataaaataatcattatttgagttgt 72  Q
    |||||||||||| ||||||||||| ||||||||||| ||| ||||||||||    
T  37187453 ttaagtggaccctacaccacttttaaataaaataattattttttgagttgt 37187503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 14728903 - 14728845
Alignment:
Q  172 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatg 230  Q
    ||||||||| ||||||||||| ||||||||||||||  ||||| |||| ||||| ||||    
T  14728903 tgatgtgtccatgtgagacccatttaagacctcaaagttgagggtctccattgtggatg 14728845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 26705759 - 26705701
Alignment:
Q  172 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatg 230  Q
    |||||| || ||||| || |||||||||||||||||||||||| |||| ||||| ||||    
T  26705759 tgatgtatccatgtgtgaaccgtttaagacctcaaatgtgagggtctccattgttgatg 26705701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 7573163 - 7573111
Alignment:
Q  91 ccatttatatcttttggtatatgatcaccattagaatggttgagtacctatta 143  Q
    |||||||||||||||| || |||||| |||||  | |||||||||||||||||    
T  7573163 ccatttatatcttttgatagatgatctccattgtagtggttgagtacctatta 7573111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 20683293 - 20683369
Alignment:
Q  4 tcacttaagacccc-aatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtttttgtt 79  Q
    |||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  20683293 tcacttaagacccctaatcttaagtagaccccacaccacttttcaaaaaaataatcattatttgagttgcttttgtt 20683369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 11512094 - 11512020
Alignment:
Q  6 acttaagacccc-aatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtttttgtt 79  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||    
T  11512094 acttaagacccccaatcttaagtggaccccacaccacttttcaataaaataatcattgtttaaattgtttttgtt 11512020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 39445801 - 39445875
Alignment:
Q  4 tcacttaagaccccaatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtttttgtt 79  Q
    ||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||| ||| |||| ||||||||    
T  39445801 tcacttaagaccccattcttaagtggaccccacacaactttttaataaaataatcattgttt-agttatttttgtt 39445875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 20683480 - 20683538
Alignment:
Q  172 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatg 230  Q
    ||||||||| ||||||||||  ||||||||||||||||||||| |||||||||| ||||    
T  20683480 tgatgtgtccatgtgagacctatttaagacctcaaatgtgagggtctctattgtggatg 20683538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 155
Target Start/End: Original strand, 11915975 - 11916053
Alignment:
Q  77 gttatcggtggaacccatttatatcttttggtatatgatcaccattagaatggttgagtacctattaggtaccattatt 155  Q
    |||||||||||||||||| || | |||||| || | | || ||||| || |||||||||||||||||||||| ||||||    
T  11915975 gttatcggtggaacccatatagaccttttgttagagggtctccattggagtggttgagtacctattaggtactattatt 11916053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 43302429 - 43302487
Alignment:
Q  172 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatg 230  Q
    ||||||||||||||| |||| |||||||||||||||  ||||| |||||||||| ||||    
T  43302429 tgatgtgtcaatgtgggacctgtttaagacctcaaaattgagggtctctattgtggatg 43302487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 11511905 - 11511847
Alignment:
Q  172 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatg 230  Q
    ||||||||| ||||| ||||||||||||||||||||| ||||  |||| ||||| ||||    
T  11511905 tgatgtgtccatgtgggacccgtttaagacctcaaatatgagtgtctccattgtggatg 11511847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 32414669 - 32414717
Alignment:
Q  182 atgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatg 230  Q
    ||||| || |||||||||||||||||| |||||||||| ||||| ||||    
T  32414669 atgtgggatccgtttaagacctcaaatttgaggatctccattgtggatg 32414717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 33882000 - 33882073
Alignment:
Q  6 acttaagaccccaatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtttttgtt 79  Q
    ||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||| ||| |||||||    
T  33882000 acttaagaccccaattttaagtggatcccacaccatttttcaataaaataatcattatttgaattgcttttgtt 33882073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 37503837 - 37503902
Alignment:
Q  4 tcacttaagacccc-aatcttaagtggaccccacaccacttttcaataaaataatcattatttgag 68  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37503837 tcacttaagacccccaatcttaagtggatcccacaccacttttcaataaaataatcattatttgag 37503902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 958173 - 958102
Alignment:
Q  6 acttaagaccccaatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtttttg 77  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||| ||| |||||    
T  958173 acttaagaccccaatcttaagtggaccacacacaacttttcaataaaataatcattgtttgaattgcttttg 958102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 80
Target Start/End: Complemental strand, 31387056 - 31386982
Alignment:
Q  6 acttaagaccccaatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtttttgtta 80  Q
    ||||||||||| ||||||||||||   |||||| |||||||||||||||||||||| ||||| ||||||||||||    
T  31387056 acttaagaccctaatcttaagtgggggccacacaacttttcaataaaataatcattgtttgaattgtttttgtta 31386982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 44238169 - 44238107
Alignment:
Q  14 ccccaatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgttttt 76  Q
    ||||||||||||||||| | |||| || |||||||||||||||||||||||||||||||||||    
T  44238169 ccccaatcttaagtggatcgcacatcatttttcaataaaataatcattatttgagttgttttt 44238107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 32444022 - 32443962
Alignment:
Q  6 acttaagaccccaatcttaagtggaccccacaccacttttcaataaaataatcattatttg 66  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||| || |||||    
T  32444022 acttaagaccccaatcttaagtggcccccacacaacttttcaataaaataatgataatttg 32443962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 33326585 - 33326513
Alignment:
Q  4 tcacttaagaccccaatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgttttt 76  Q
    |||||||||||| ||||||||||||||  |||||| |||||||| ||||||||||||| ||||||||| ||||    
T  33326585 tcacttaagacctcaatcttaagtggattccacacaacttttcattaaaataatcattgtttgagttgatttt 33326513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 44484164 - 44484093
Alignment:
Q  6 acttaagaccccaa-tcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgttttt 76  Q
    |||||||||||| | ||||||||||| |||||||||||||||||||||||||| ||||||||| || |||||    
T  44484164 acttaagacccccagtcttaagtggatcccacaccacttttcaataaaataattattatttgaattattttt 44484093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 42710662 - 42710605
Alignment:
Q  4 tcacttaagaccccaatcttaagtggaccccacaccacttttcaataaaataatcatt 61  Q
    ||||||||||| ||| ||||||||| ||||||||| |||||| |||||||||||||||    
T  42710662 tcacttaagactccattcttaagtgaaccccacacaactttttaataaaataatcatt 42710605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 42988251 - 42988325
Alignment:
Q  4 tcacttaagaccccaatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtttttgtt 79  Q
    ||||||||||| |||||||||||||  | | |||| |||||| | ||||||||| |||||||||||||||||||||    
T  42988251 tcacttaagactccaatcttaagtgttctc-acactactttttactaaaataattattatttgagttgtttttgtt 42988325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 44237988 - 44237941
Alignment:
Q  172 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctc 219  Q
    ||||||||| |||||||| |||||||||||||||||||||||| ||||    
T  44237988 tgatgtgtctatgtgagagccgtttaagacctcaaatgtgagggtctc 44237941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 25795803 - 25795750
Alignment:
Q  176 gtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagat 229  Q
    ||||||||||| ||||||||||||| ||||||  ||| ||||||||||||||||    
T  25795803 gtgtcaatgtgggacccgtttaagatctcaaaattgaagatctctattgtagat 25795750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 33882189 - 33882231
Alignment:
Q  172 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgagg 214  Q
    ||||||||| ||||| || ||||||||||||||||||||||||    
T  33882189 tgatgtgtccatgtgggatccgtttaagacctcaaatgtgagg 33882231  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 17603991 - 17603934
Alignment:
Q  4 tcacttaagaccccaatcttaagtggaccccacaccacttttcaataaaataatcatt 61  Q
    ||||||||||| ||| ||||||||||||| || || |||| | |||||||||||||||    
T  17603991 tcacttaagactccattcttaagtggaccacatacaacttgttaataaaataatcatt 17603934  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 22074402 - 22074435
Alignment:
Q  174 atgtgtcaatgtgagacccgtttaagacctcaaa 207  Q
    ||||||| ||||||||||||||||||||||||||    
T  22074402 atgtgtccatgtgagacccgtttaagacctcaaa 22074435  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 30224770 - 30224807
Alignment:
Q  118 ccattagaatggttgagtacctattaggtaccattatt 155  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  30224770 ccattagagtggttgagtacctattaggtactattatt 30224807  T

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Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 37504017 - 37504070
Alignment:
Q  172 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgt 225  Q
    ||||||||| | ||| |||||||||||||| |||||||||||| |||| |||||    
T  37504017 tgatgtgtccacgtgggacccgtttaagacttcaaatgtgagggtctccattgt 37504070  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 25795979 - 25795924
Alignment:
Q  23 taagtggaccccacaccacttttcaataaaataatcattatttgagttgtttttgtt 79  Q
    |||||||||||||||| |||||  ||||||||||||||| ||| |||| ||||||||    
T  25795979 taagtggaccccacacaactttctaataaaataatcattgttt-agttatttttgtt 25795924  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 30250260 - 30250326
Alignment:
Q  8 ttaagaccccaatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtttt 75  Q
    ||||||||| | ||||||||||| | |||||||||||| |||||||||||||||  ||||||||||||    
T  30250260 ttaagaccctattcttaagtggatctcacaccactttttaataaaataatcatt-gttgagttgtttt 30250326  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 31632496 - 31632436
Alignment:
Q  5 cacttaagaccccaat-cttaagtggaccccacaccacttttcaataaaataatcattatt 64  Q
    ||||||||||||| || |||||||||| ||||||| | |||| ||||||||||||||||||    
T  31632496 cacttaagacccccattcttaagtggatcccacacaattttttaataaaataatcattatt 31632436  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 379093 - 379151
Alignment:
Q  172 tgatgtgtcaatgtgagacccgtttaagacctcaaatgtgaggatctctattgtagatg 230  Q
    ||||||||| ||||| ||||||||||||||||||||  ||||  |||||||||| ||||    
T  379093 tgatgtgtctatgtgggacccgtttaagacctcaaaattgagagtctctattgtggatg 379151  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 4405661 - 4405616
Alignment:
Q  185 tgagacccgtttaagacctcaaatgtgaggatctctattgtagatg 230  Q
    |||||||||||||||||||||||||  ||| |||||||||| ||||    
T  4405661 tgagacccgtttaagacctcaaatgcaagggtctctattgtggatg 4405616  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 33099678 - 33099603
Alignment:
Q  4 tcacttaagaccc-caatcttaagtggaccccacaccacttttcaataaaataatcattatttgagttgtttttgtt 79  Q
    ||||||||||| | || ||||||||||||||||  ||| |||| | |||||||||||||  ||||||||||||||||    
T  33099678 tcacttaagacactcattcttaagtggaccccatgccattttttattaaaataatcatt-gttgagttgtttttgtt 33099603  T

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Target: scaffold0067 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 226 - 267
Alignment:
Q  20 tcttaagtggaccccacaccacttttcaataaaataatcatt 61  Q
    ||||||||||||||||||| |||||| |||||||||||||||    
T  226 tcttaagtggaccccacacaactttttaataaaataatcatt 267  T

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