View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11385A_low_286 (Length: 230)

Name: NF11385A_low_286
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11385A_low_286
NF11385A_low_286
[»] chr3 (19 HSPs)
chr3 (1-215)||(33399482-33399696)
chr3 (4-204)||(46992149-46992349)
chr3 (4-215)||(14399502-14399713)
chr3 (4-204)||(7841918-7842118)
chr3 (4-204)||(36816419-36816619)
chr3 (4-202)||(13746624-13746822)
chr3 (6-204)||(48249772-48249970)
chr3 (4-204)||(77923-78123)
chr3 (4-204)||(21955141-21955341)
chr3 (4-204)||(29930326-29930526)
chr3 (4-204)||(29979480-29979680)
chr3 (4-202)||(9428736-9428934)
chr3 (4-202)||(30946545-30946743)
chr3 (4-202)||(3949703-3949901)
chr3 (4-202)||(6741847-6742045)
chr3 (4-202)||(8159886-8160084)
chr3 (4-202)||(16445580-16445778)
chr3 (59-202)||(50954233-50954376)
chr3 (40-152)||(25059880-25059992)
[»] chr1 (23 HSPs)
chr1 (4-215)||(26466173-26466384)
chr1 (4-215)||(32106546-32106754)
chr1 (6-188)||(25231276-25231458)
chr1 (4-215)||(16246657-16246865)
chr1 (4-204)||(21943267-21943467)
chr1 (4-204)||(50116666-50116866)
chr1 (4-215)||(7980115-7980326)
chr1 (6-215)||(38691844-38692053)
chr1 (4-204)||(37015872-37016072)
chr1 (4-204)||(51663216-51663416)
chr1 (4-215)||(46974111-46974322)
chr1 (4-202)||(29355591-29355789)
chr1 (4-202)||(41454797-41454995)
chr1 (4-113)||(5078984-5079093)
chr1 (4-202)||(20350416-20350614)
chr1 (4-202)||(44620006-44620204)
chr1 (4-151)||(13174792-13174939)
chr1 (4-202)||(3947364-3947562)
chr1 (4-202)||(3984073-3984271)
chr1 (4-202)||(13630376-13630574)
chr1 (4-202)||(38775018-38775216)
chr1 (4-202)||(44466542-44466740)
chr1 (17-97)||(39914002-39914082)
[»] chr5 (18 HSPs)
chr5 (4-206)||(20285965-20286167)
chr5 (4-188)||(23028463-23028654)
chr5 (53-197)||(13157986-13158130)
chr5 (21-215)||(20286455-20286650)
chr5 (4-204)||(18537239-18537439)
chr5 (4-113)||(7020783-7020892)
chr5 (6-204)||(25896006-25896204)
chr5 (4-113)||(27866748-27866857)
chr5 (4-113)||(34078829-34078938)
chr5 (4-176)||(13567005-13567177)
chr5 (17-204)||(1035466-1035653)
chr5 (4-151)||(4202842-4202989)
chr5 (4-202)||(11032355-11032553)
chr5 (4-202)||(37819780-37819978)
chr5 (4-202)||(38859093-38859291)
chr5 (4-97)||(28885311-28885404)
chr5 (4-89)||(1036424-1036509)
chr5 (4-88)||(25048472-25048556)
[»] chr4 (14 HSPs)
chr4 (4-185)||(6182653-6182834)
chr4 (4-204)||(18580231-18580431)
chr4 (4-204)||(4976713-4976913)
chr4 (4-202)||(9890982-9891180)
chr4 (4-204)||(4978857-4979057)
chr4 (4-151)||(11502517-11502664)
chr4 (6-105)||(19072562-19072661)
chr4 (4-113)||(3404839-3404948)
chr4 (4-113)||(41024248-41024357)
chr4 (10-114)||(4769178-4769282)
chr4 (4-202)||(49565367-49565565)
chr4 (4-204)||(51643401-51643603)
chr4 (129-204)||(17140547-17140622)
chr4 (5-85)||(38463741-38463821)
[»] chr2 (19 HSPs)
chr2 (4-205)||(17997075-17997276)
chr2 (4-204)||(41007883-41008083)
chr2 (6-204)||(12907397-12907595)
chr2 (4-181)||(436292-436469)
chr2 (3-204)||(11692716-11692917)
chr2 (4-204)||(43949185-43949385)
chr2 (4-202)||(7263992-7264190)
chr2 (4-113)||(3802469-3802578)
chr2 (4-113)||(27275263-27275372)
chr2 (4-204)||(24750616-24750816)
chr2 (4-202)||(212344-212542)
chr2 (4-202)||(10623357-10623555)
chr2 (4-113)||(5348216-5348325)
chr2 (4-113)||(34920685-34920794)
chr2 (4-113)||(41561061-41561170)
chr2 (4-113)||(45476407-45476516)
chr2 (4-202)||(39794930-39795128)
chr2 (4-202)||(38946723-38946921)
chr2 (131-204)||(34920802-34920875)
[»] chr7 (15 HSPs)
chr7 (4-204)||(8400544-8400744)
chr7 (4-215)||(43827509-43827720)
chr7 (4-204)||(47061841-47062041)
chr7 (4-202)||(18106348-18106546)
chr7 (18-215)||(21799959-21800156)
chr7 (4-202)||(617652-617850)
chr7 (4-202)||(30787499-30787697)
chr7 (4-202)||(43623038-43623236)
chr7 (4-202)||(45764339-45764537)
chr7 (4-113)||(15060662-15060771)
chr7 (17-152)||(20908433-20908568)
chr7 (4-202)||(42500367-42500565)
chr7 (5-103)||(3761964-3762062)
chr7 (4-88)||(16794516-16794600)
chr7 (4-97)||(8194183-8194276)
[»] chr8 (14 HSPs)
chr8 (4-204)||(7168858-7169058)
chr8 (4-204)||(35965648-35965848)
chr8 (4-204)||(39751931-39752131)
chr8 (4-204)||(45455334-45455534)
chr8 (5-152)||(14401676-14401825)
chr8 (17-151)||(22580914-22581048)
chr8 (4-204)||(43689074-43689274)
chr8 (59-181)||(2145948-2146070)
chr8 (4-202)||(7341039-7341237)
chr8 (4-202)||(8422759-8422957)
chr8 (4-202)||(30304513-30304711)
chr8 (4-202)||(32377811-32378009)
chr8 (4-202)||(32431768-32431966)
chr8 (4-113)||(1115821-1115930)
[»] chr6 (10 HSPs)
chr6 (6-204)||(18606954-18607152)
chr6 (4-202)||(28250856-28251054)
chr6 (6-200)||(24220128-24220324)
chr6 (4-151)||(31147333-31147480)
chr6 (4-202)||(1611654-1611852)
chr6 (4-113)||(21358250-21358359)
chr6 (4-113)||(23962232-23962341)
chr6 (37-152)||(34111598-34111713)
chr6 (129-204)||(35243561-35243636)
chr6 (129-202)||(13387722-13387795)
[»] scaffold0341 (1 HSPs)
scaffold0341 (4-113)||(16260-16369)
[»] scaffold0494 (1 HSPs)
scaffold0494 (4-202)||(1841-2039)
[»] scaffold0101 (1 HSPs)
scaffold0101 (4-202)||(33769-33967)


Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 33399696 - 33399482
Alignment:
Q  1 tggtcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  33399696 tggtcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacgtacaagcttcttgccatcctcctttaatctacccgcaagcat 33399597  T
Q  101 gtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  33399596 gtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgcttgcctactaagatatccacgaaccatg 33399497  T
Q  201 aacatacacctacat 215  Q
    |||||||||||||||    
T  33399496 aacatacacctacat 33399482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 204
Target Start/End: Original strand, 46992149 - 46992349
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || ||||| |||| ||||||||| |   |||||||||| ||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  46992149 tcttcaaatgtatcaaaaaatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 46992248  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 203  Q
    || |||||||    | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  46992249 tccttctaaagccggctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaac 46992348  T
Q  204 a 204  Q
    |    
T  46992349 a 46992349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 215
Target Start/End: Complemental strand, 14399713 - 14399502
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||| ||||| ||||| ||||||| |||||| |||||||||||| ||||| |||||    
T  14399713 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcatccttctttaatctaccggcaagaatgtg 14399614  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 203  Q
    || |||||||    | | |||  | ||||||||||||||||| ||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  14399613 tccttctaaagccggctccatggcatggttgtgaactccatttagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaac 14399514  T
Q  204 atacacctacat 215  Q
    | ||||| ||||    
T  14399513 aaacacccacat 14399502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 4 - 204
Target Start/End: Original strand, 7841918 - 7842118
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||| ||||| ||||| ||||||| | ||||||||||||||||  ||||| |||||    
T  7841918 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctacaggcaagaatgtg 7842017  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 203  Q
    || |||||||    | | |||| | ||||||||||||||||||||||| || ||||   | || ||||||||| ||||  ||||| ||| || |||||||    
T  7842018 tccttctaaagccggcttcatcgcatggttgtgaactccattaagaatgttcaatcctcattcctttgtttgcttactttgatatccactaatcatgaac 7842117  T
Q  204 a 204  Q
    |    
T  7842118 a 7842118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 4 - 204
Target Start/End: Original strand, 36816419 - 36816619
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||| ||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  36816419 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 36816518  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 203  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  36816519 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaac 36816618  T
Q  204 a 204  Q
    |    
T  36816619 a 36816619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 202
Target Start/End: Original strand, 13746624 - 13746822
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||| ||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  13746624 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 13746723  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  13746724 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 13746822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 6 - 204
Target Start/End: Original strand, 48249772 - 48249970
Alignment:
Q  6 ttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtc 105  Q
    ||||||| || |||||||||| ||||||||| |   |||||||||| ||||| ||||  ||||||| | ||||||||||||||||| ||||| |||||||    
T  48249772 ttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacagtcttcttgtcgtcctcctttaatctaccggcaagaatgtgtc 48249871  T
Q  106 tttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 204  Q
     || ||||    | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||    
T  48249872 cttataaagccggctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaaca 48249970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 204
Target Start/End: Original strand, 77923 - 78123
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||| ||||| ||||| ||||||| | || |||||||||||||| ||||  |||||    
T  77923 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcttcctttaatctaccggcaataatgtg 78022  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 203  Q
    || |||||||    | | ||||   ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  78023 tccttctaaagccggctccatcaaatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaac 78122  T
Q  204 a 204  Q
    |    
T  78123 a 78123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 204
Target Start/End: Original strand, 21955141 - 21955341
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||| ||||| ||||| ||||||| | ||||||||||||||||| ||||  |||||    
T  21955141 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaataatgtg 21955240  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 203  Q
    || ||||| |    | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||| | ||||  ||||| ||| || |||||||    
T  21955241 tccttctagagccggctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttacttactttgatatccactaatcatgaac 21955340  T
Q  204 a 204  Q
    |    
T  21955341 a 21955341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 204
Target Start/End: Complemental strand, 29930526 - 29930326
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||| | ||||||||| |   |||||||||| ||||| ||||| ||||||| | |||||||||||||||||  |||| |||||    
T  29930526 tcttcaaatgtatcaaaatatgtcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccgccaagaatgtg 29930427  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 203  Q
    || |||||||    |   |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  29930426 tccttctaaagccggcatcatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaac 29930327  T
Q  204 a 204  Q
    |    
T  29930326 a 29930326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 204
Target Start/End: Complemental strand, 29979680 - 29979480
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||| | ||||||||| |   |||||||||| ||||| ||||| ||||||| | |||||||||||||||||  |||| |||||    
T  29979680 tcttcaaatgtatcaaaatatgtcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccgccaagaatgtg 29979581  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 203  Q
    || |||||||    |   |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  29979580 tccttctaaagccggcatcatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaac 29979481  T
Q  204 a 204  Q
    |    
T  29979480 a 29979480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 202
Target Start/End: Original strand, 9428736 - 9428934
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   ||||| |||| ||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  9428736 tcttcaaatgtatcaaaatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 9428835  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  9428836 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 9428934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 202
Target Start/End: Original strand, 30946545 - 30946743
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||| ||||| ||| | ||||||| ||||||||||||||||||| ||||| |||||    
T  30946545 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcatcctcctttaatctaccggcaagaatgtg 30946644  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  30946645 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 30946743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 3949901 - 3949703
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||| ||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  3949901 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 3949802  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  3949801 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 3949703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 6742045 - 6741847
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||| ||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  6742045 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 6741946  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  6741945 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 6741847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 202
Target Start/End: Original strand, 8159886 - 8160084
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||| ||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  8159886 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 8159985  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  8159986 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 8160084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 16445778 - 16445580
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   ||||| |||| ||||| ||||| ||||||| | ||||||||||||||||| | ||| |||||    
T  16445778 tcttcaaatgtatcaaaatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggaaagaatgtg 16445679  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  16445678 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 16445580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 202
Target Start/End: Complemental strand, 50954376 - 50954233
Alignment:
Q  59 tacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaat 158  Q
    ||||| ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    | | |||    ||||||||||||||||||||||| || |||    
T  50954376 tacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaat 50954277  T
Q  159 ctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    | | | || ||||||||| ||||  ||||| ||| || ||||||    
T  50954276 ccccattcctttgtttgcttactttgatatccactaatcatgaa 50954233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 152
Target Start/End: Original strand, 25059880 - 25059992
Alignment:
Q  40 aactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaac 139  Q
    |||||||||||| |||||||| || || |||| | |||| | |||||||  ||||||| ||||| | | |||||  | || ||||||  |||||||||||    
T  25059880 aactcttggtcaagtcacatataatctccttgtcgtccttcattaatctttccgcaagaatgtgccctgctaaatatggtaacatcttatggttgtgaac 25059979  T
Q  140 tccattaagaata 152  Q
     ||||||||||||    
T  25059980 accattaagaata 25059992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 4 - 215
Target Start/End: Original strand, 26466173 - 26466384
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||||||||||||||||| |||||||||||  | ||||||||| ||||| ||||| ||||||  |||||||||||||||||||||||||||||||    
T  26466173 tcttcaaatttaacaaaatatttcttggaagcaccttagtcttggtcaagtcacgtacaatcttcttatcatcctcctttaatctacccgcaagcatgtg 26466272  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 203  Q
    || |||||||    | | |||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||| ||||||    
T  26466273 tcattctaaagccggctccatctcatggttgtgaactccattaagaatgtttaatctccaatcatttgtttgcctactaagatatccacgaacaatgaac 26466372  T
Q  204 atacacctacat 215  Q
    ||||||||||||    
T  26466373 atacacctacat 26466384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 4 - 215
Target Start/End: Original strand, 32106546 - 32106754
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||||||||||  ||||||||  |||||||||||||||||||| ||||||||||||||| ||| ||| ||||||||||||||| |||| ||||||    
T  32106546 tcttcaaatttaacaac-tattttttcaaagcaccaaactcttggtcaagtcacatacaagctttttgtcattctcctttaatctaccagcaatcatgtg 32106644  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 203  Q
    || |||||||||| | | |||||| || ||||||||||  ||||||||||| |||||| |||||||||||| ||| ||||||||| ||||||||||||||    
T  32106645 tccttctaaacttggctccatctcatgattgtgaactc--ttaagaatattcaatctccaatcatttgtttaccttctaagatatccacgaaccatgaac 32106742  T
Q  204 atacacctacat 215  Q
    || |||| ||||    
T  32106743 attcacccacat 32106754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 6 - 188
Target Start/End: Complemental strand, 25231458 - 25231276
Alignment:
Q  6 ttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtc 105  Q
    ||||||||||||||||||||| ||  |||||||||||  ||||||| ||||| ||||| |||||||  ||||||| || ||||||| |||||||||||||    
T  25231458 ttcaaatttaacaaaatatttgttaaaagcaccaaacatttggtcaagtcacgtacaatcttcttggtatcctcccttgatctacctgcaagcatgtgtc 25231359  T
Q  106 tttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatat 188  Q
     ||| |||||| | | | ||||  |||||||||||||||| | |||||| |||||| | |||||||||| |||||||| ||||    
T  25231358 cttccaaacttggcttcgtctcacggttgtgaactccattgaaaatattcaatctccagtcatttgtttccctactaatatat 25231276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 215
Target Start/End: Original strand, 16246657 - 16246865
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    |||||||||||||||||||||| || ||| |||||   || ||||| || |||| ||||| ||||||| ||||||| ||||||||||| | |||||||||    
T  16246657 tcttcaaatttaacaaaatattctt-ggatgcaccttgcttttggtaag-tcacgtacaatcttcttgtcatcctcttttaatctaccggtaagcatgtg 16246754  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 203  Q
    || ||||||| |  | | |||| | |||||||||||| |||||| ||| || |||||| | ||||||||||||||||  |||||||||| ||||||||||    
T  16246755 tccttctaaagtcggctccatcgcatggttgtgaacttcattaacaat-ttcaatctccattcatttgtttgcctacacagatattcactaaccatgaac 16246853  T
Q  204 atacacctacat 215  Q
    ||||||| ||||    
T  16246854 atacacccacat 16246865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 204
Target Start/End: Original strand, 21943267 - 21943467
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    |||||||||||| |||||||||| ||||||||| |   |||||||||| ||||| ||||| ||||||| | ||||||||||||||||| | ||| |||||    
T  21943267 tcttcaaatttatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggtaagaatgtg 21943366  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 203  Q
    || ||||||||   | | |||| | ||||||||||||||||| ||||| || |||| | | || ||||||||||||||  ||||| ||| |||||| |||    
T  21943367 tccttctaaacccggctccatcccatggttgtgaactccattgagaatgttcaatccccattcctttgtttgcctactttgatatccactaaccataaac 21943466  T
Q  204 a 204  Q
    |    
T  21943467 a 21943467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 4 - 204
Target Start/End: Original strand, 50116666 - 50116866
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| | |||||||||||| |||||  |||| ||||||| | ||||||||||||||||| ||||| |||||    
T  50116666 tcttcaaatgtatcaaaatatttcttggaagcatctaactcttggtcaagtcacgaacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 50116765  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 203  Q
    || |||||||    | | |||| | |||| |||||||||||||||||| || |||||| | || ||| ||||| ||||  ||||| ||| || |||||||    
T  50116766 tccttctaaagccggctccatcgcatggtagtgaactccattaagaatgttcaatctccattcctttatttgcttactttgatatccactaatcatgaac 50116865  T
Q  204 a 204  Q
    |    
T  50116866 a 50116866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 215
Target Start/End: Original strand, 7980115 - 7980326
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||| ||||| ||||| ||||||| ||||||||||||||||||| ||||| |||||    
T  7980115 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcatcctcctttaatctaccggcaagaatgtg 7980214  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 203  Q
    || |||||||      | |||  | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  7980215 tccttctaaagccgactgcattgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaac 7980314  T
Q  204 atacacctacat 215  Q
    | ||||| ||||    
T  7980315 aaacacccacat 7980326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 215
Target Start/End: Original strand, 38691844 - 38692053
Alignment:
Q  6 ttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtc 105  Q
    ||||||| || |||||||||| ||||||||| |   |||||||||| ||||| ||||| ||||||| | |||||||||||| |||| ||||| | |||||    
T  38691844 ttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatttaccggcaagaacgtgtc 38691943  T
Q  106 tttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacat 205  Q
     ||||||| |  | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||     
T  38691944 cttctaaagtcggctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaa 38692043  T
Q  206 acacctacat 215  Q
    ||||| ||||    
T  38692044 acacccacat 38692053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 204
Target Start/End: Complemental strand, 37016072 - 37015872
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||| |||||  |||| ||||||| | ||||||||||||||||| ||||| |||||    
T  37016072 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgcacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 37015973  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 203  Q
    || |||||||    | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  37015972 tccttctaaagccagctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaac 37015873  T
Q  204 a 204  Q
    |    
T  37015872 a 37015872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 204
Target Start/End: Complemental strand, 51663416 - 51663216
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||| ||| | ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  51663416 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcgcgtacaatcttcttgtcctcctcctttaatctaccagcaagaatgtg 51663317  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 203  Q
    || |||||||    | | |||| | ||||||||| ||||||||||||| || |||| | | || ||||||||| ||||  ||||||||| || |||||||    
T  51663316 tcattctaaagccggcttcatcgcatggttgtgagctccattaagaatgttcaatccccattcttttgtttgcttactttgatattcactaatcatgaac 51663217  T
Q  204 a 204  Q
    |    
T  51663216 a 51663216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 215
Target Start/End: Complemental strand, 46974322 - 46974111
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    |||| |||| || |||||||||| ||||||||| |   |||||||||| ||||| ||||| ||||||| | |||||||||||| |||| ||||| |||||    
T  46974322 tctttaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatgtaccggcaagaatgtg 46974223  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 203  Q
    || ||||||| |  | | |||| | ||||||| ||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  46974222 tccttctaaagtcggctccatcgcatggttgtaaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaac 46974123  T
Q  204 atacacctacat 215  Q
    | ||||| ||||    
T  46974122 aaacacccacat 46974111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 202
Target Start/End: Original strand, 29355591 - 29355789
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||| ||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  29355591 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 29355690  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  29355691 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 29355789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 41454995 - 41454797
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||| ||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  41454995 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 41454896  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  41454895 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 41454797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 5079093 - 5078984
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| ||  ||||||||| ||||||||| |   |||||||||| ||||| ||||| ||||||||| ||||||||||||||||| ||||| |||||    
T  5079093 tcttcaaatgtattaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgccgtcctcctttaatctaccggcaagaatgtg 5078994  T
Q  104 tctttctaaa 113  Q
    || |||||||    
T  5078993 tccttctaaa 5078984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 20350614 - 20350416
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||| ||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  20350614 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 20350515  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    || |||||||    | | |||    ||||||||||||||||||||||| ||||||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  20350514 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgtttaatccccattcctttgtttgcttactttgatatccactaatcatgaa 20350416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 202
Target Start/End: Original strand, 44620006 - 44620204
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   ||||| |||| ||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  44620006 tcttcaaatgtatcaaaatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 44620105  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  44620106 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 44620204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 151
Target Start/End: Complemental strand, 13174939 - 13174792
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||| |||||  |||| ||||||| | ||||||||||||||||| || || |||||    
T  13174939 tcttcaaatgtatcaaaatatttattggaagcatcttgctcttggtcaagtcacgaacaatcttcttgtcgtcctcctttaatctaccagcgagaatgtg 13174840  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaat 151  Q
    || | |||||    | | |||| | |||||||||||||||||||||||    
T  13174839 tcctcctaaagccggctccatcgcatggttgtgaactccattaagaat 13174792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 202
Target Start/End: Original strand, 3947364 - 3947562
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||| ||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  3947364 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 3947463  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  3947464 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 3947562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 3984271 - 3984073
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||| ||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  3984271 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 3984172  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  3984171 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 3984073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 13630574 - 13630376
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   ||||| |||| ||||| ||||| ||||||| | ||||||||||||||||| | ||| |||||    
T  13630574 tcttcaaatgtatcaaaatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggaaagaatgtg 13630475  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  13630474 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 13630376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 202
Target Start/End: Original strand, 38775018 - 38775216
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||| ||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  38775018 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 38775117  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  38775118 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 38775216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 44466740 - 44466542
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||| ||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  44466740 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 44466641  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  44466640 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 44466542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 39914082 - 39914002
Alignment:
Q  17 caaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaag 97  Q
    ||||||||||||| |  |||||||||||||||||| ||||| ||||| ||||||| |||||| | ||||||| | ||||||    
T  39914082 caaaatatttttttgttgcaccaaactcttggtcaagtcacgtacaatcttcttgtcatccttcattaatcttctcgcaag 39914002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 4 - 206
Target Start/End: Complemental strand, 20286167 - 20285965
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||||||||||||||||| |||||||||||  ||||||||| | ||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  20286167 tcttcaaatttaacaaaatatttcttggaagcaccttactcttggttaagtcacatacaatcttcttgtcatcctcctttaatctacccgcaagcatgtg 20286068  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 203  Q
    || |||||||    | | |||| | ||||||||||||||||||||||| || | | || | |||||||||||||||||||||||| |||  |||||||||    
T  20286067 tccttctaaagccggctccatcacatggttgtgaactccattaagaatgttcagtttccattcatttgtttgcctactaagatatccacttaccatgaac 20285968  T
Q  204 ata 206  Q
    |||    
T  20285967 ata 20285965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 4 - 188
Target Start/End: Original strand, 23028463 - 23028654
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcaca-------tacaagcttcttgccatcctcctttaatctacccgcaa 96  Q
    ||||||||||||| ||||||||||||| ||||| |||||||||||||| |||||        ||||| ||||||| |||||||| |||||||||||||||    
T  23028463 tcttcaaatttaataaaatattttttgaaagcatcaaactcttggtcaagtcaccaatcatgtacaatcttcttgtcatcctcccttaatctacccgcaa 23028562  T
Q  97 gcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatat 188  Q
    ||||||||  ||||||||||   | |||||| ||||||||||||||||||| |||||| |||||| |||||||||||| |||||||||||||    
T  23028563 gcatgtgttcttctaaacttgccttcatctcatggttgtgaactccattaataatattcaatctccaatcatttgtttccctactaagatat 23028654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 53 - 197
Target Start/End: Original strand, 13157986 - 13158130
Alignment:
Q  53 gtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaata 152  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||| ||| || |||| ||   | ||| || |||||||||||||||||||||||     
T  13157986 gtcacatacaagtttcttgtcatcctcctttaatctacccgcaagcatgcgtccttttaaatttgactccatttcatggttgtgaactccattaagaatg 13158085  T
Q  153 tttaatctcgaatcatttgtttgcctactaagatattcacgaacc 197  Q
    || |||||| |||||||||||||| || |||||||| ||||||||    
T  13158086 ttcaatctccaatcatttgtttgcttattaagatatccacgaacc 13158130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 20286650 - 20286455
Alignment:
Q  21 atattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgtt 120  Q
    |||||| ||||| |||||  ||||||||||| ||||  ||||| ||| ||| ||||||||||||||||||||||||||||||||| |||||||    | |    
T  20286650 atatttcttggatgcaccttactcttggtcaagtcatgtacaatctttttgtcatcctcctttaatctacccgcaagcatgtgtccttctaaagccggct 20286551  T
Q  121 acatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcac-gaaccatgaacatacacctacat 215  Q
     |||| | ||||||| ||||||||||||||| || |   || | |||||||||||||||||||||||| |||  | ||||||||||||||| ||||    
T  20286550 ccatcacatggttgtaaactccattaagaatgttcaggttccattcatttgtttgcctactaagatatccacttacccatgaacatacacccacat 20286455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 4 - 204
Target Start/End: Original strand, 18537239 - 18537439
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |  ||||||||||| ||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  18537239 tcttcaaatgtatcaaaatatttcttggaagcatctcactcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 18537338  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 203  Q
    || |||||||  | | |  ||| | ||||||||||||||||||||||| || |||| | | || ||||||| | ||||  ||||| ||| || |||||||    
T  18537339 tccttctaaagctggctcaatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgttttcttactttgatatccactaatcatgaac 18537438  T
Q  204 a 204  Q
    |    
T  18537439 a 18537439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 7020783 - 7020892
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||| ||||||||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  7020783 tcttcaaatgtatcaaaatatttcttggaagcatcttcctcttggtcaagtcacatacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 7020882  T
Q  104 tctttctaaa 113  Q
    || |||||||    
T  7020883 tccttctaaa 7020892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 6 - 204
Target Start/End: Original strand, 25896006 - 25896204
Alignment:
Q  6 ttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtc 105  Q
    ||||||| || |||||||||| ||||||||| |   |||||||||| ||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||||    
T  25896006 ttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtc 25896105  T
Q  106 tttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 204  Q
     |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||    
T  25896106 cttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaaca 25896204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 27866748 - 27866857
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||| ||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  27866748 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 27866847  T
Q  104 tctttctaaa 113  Q
    || |||||||    
T  27866848 tccttctaaa 27866857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 34078938 - 34078829
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||| ||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  34078938 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 34078839  T
Q  104 tctttctaaa 113  Q
    || |||||||    
T  34078838 tccttctaaa 34078829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 176
Target Start/End: Original strand, 13567005 - 13567177
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||| ||||| ||||| ||||||| | |||| |||||||||||| ||||| |||||    
T  13567005 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtccttctttaatctaccggcaagaatgtg 13567104  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgc 176  Q
    || |||||||  | | | |||    ||||||||||||||||||||||| || |||| | | || |||||||||    
T  13567105 tccttctaaagctggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgc 13567177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 1035466 - 1035653
Alignment:
Q  17 caaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaactt 116  Q
    |||||||||| ||||||||| |   |||||||||| ||||| |||||  |||||| | ||||||||||||||||| ||||| ||||||| |||||||       
T  1035466 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatattcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 1035565  T
Q  117 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 204  Q
     | | |||  | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||    
T  1035566 ggctccatggcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaaca 1035653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 151
Target Start/End: Original strand, 4202842 - 4202989
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||  ||||||||| |   |||||| ||| ||||| ||||| ||||||| | ||||||||||||||||| |||||  ||||    
T  4202842 tcttcaaatgtatcaaaatattacttggaagcatcttgctcttgatcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagagtgtg 4202941  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaat 151  Q
    || |||||||    | | |||| | |||||||||||||||||||||||    
T  4202942 tccttctaaagccggctccatcgcatggttgtgaactccattaagaat 4202989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 202
Target Start/End: Original strand, 11032355 - 11032553
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   || || |||| ||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  11032355 tcttcaaatgtatcaaaatatttcttggaagcatcttgctttttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 11032454  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  11032455 tcattctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcttttgtttgcttactttgatatccactaatcatgaa 11032553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 202
Target Start/End: Original strand, 37819780 - 37819978
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||| ||||| ||| | ||||||| | ||||||||||||||||| ||||  |||||    
T  37819780 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaacaatgtg 37819879  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  37819880 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 37819978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 202
Target Start/End: Original strand, 38859093 - 38859291
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |    | || |||| ||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  38859093 tcttcaaatgtatcaaaatatttcttggaagcatcttgttttttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 38859192  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||||| | || ||||||||| ||||  ||||| ||| || ||||||    
T  38859193 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatctccattcttttgtttgcttactttgatatccactaatcatgaa 38859291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 28885311 - 28885404
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaag 97  Q
    ||||||||| || |||||||||| ||||||||| |   ||||| |||| ||||| ||||| ||||||| | ||||||||||||||||| |||||    
T  28885311 tcttcaaatgtatcaaaatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaag 28885404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 1036509 - 1036424
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatcta 89  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||| ||||| |||||  |||||| | |||||||||||||||    
T  1036509 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatattcttgtcgtcctcctttaatcta 1036424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 25048556 - 25048472
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatct 88  Q
    |||||||||||| ||||||||||| |||   || | |||| ||||||| |||| |||||| ||||||| | |||||| |||||||    
T  25048556 tcttcaaatttatcaaaatattttatggtttcaacgaactattggtcaagtcatatacaatcttcttgtcgtcctccattaatct 25048472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 4 - 185
Target Start/End: Complemental strand, 6182834 - 6182653
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||| ||||  |||||  |||||| || | ||| ||||| |||  |||||||| ||    
T  6182834 tcttaaaatttaacaaaatattttttgaaagcaccaaactcttggtcaagtcatgtacaattttcttgtcaccatcccttaatatacttgcaagcatatg 6182735  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaaga 185  Q
    || |||||||||| | | |||||| |||||||||||||||| ||||||||| |||||| |||| ||||||| ||||||||||    
T  6182734 tccttctaaacttggcttcatctcatggttgtgaactccatcaagaatattcaatctccaatcgtttgtttccctactaaga 6182653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 204
Target Start/End: Original strand, 18580231 - 18580431
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||| ||||||||||| ||||||| | ||||||||||||||| | ||||| |||||    
T  18580231 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacatacaatcttcttgtcgtcctcctttaatctatcggcaagaatgtg 18580330  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 203  Q
    || |||||||    | | |||  | ||||||||||||||||||||||| |||||||   | || ||||||||| ||||  ||||| ||| || |||||||    
T  18580331 tcattctaaagccggcttcattgcatggttgtgaactccattaagaatgtttaatcctcattcctttgtttgcttactttgatatccactaatcatgaac 18580430  T
Q  204 a 204  Q
    |    
T  18580431 a 18580431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 4 - 204
Target Start/End: Complemental strand, 4976913 - 4976713
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||| ||||| ||||| ||||||| | |||||||||| |||||| ||||| |||||    
T  4976913 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttagtctaccggcaagaatgtg 4976814  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 203  Q
    ||||||||||    | | |||| | ||||||  ||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  4976813 tctttctaaagccggctccatcgcatggttgcaaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaac 4976714  T
Q  204 a 204  Q
    |    
T  4976713 a 4976713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 9891180 - 9890982
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   ||||| |||| ||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  9891180 tcttcaaatgtatcaaaatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 9891081  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  9891080 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 9890982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 204
Target Start/End: Original strand, 4978857 - 4979057
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||| ||||| ||||| ||||||| | || ||||||| ||| |  ||||| |||||    
T  4978857 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcatcctttagtctgctggcaagaatgtg 4978956  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 203  Q
    || ||||||| |  | | |||| | |||||| |||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  4978957 tccttctaaagtcggctccatcgcatggttgggaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaac 4979056  T
Q  204 a 204  Q
    |    
T  4979057 a 4979057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 151
Target Start/End: Complemental strand, 11502664 - 11502517
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||| ||||| ||||| ||||||| | || |||||||||||||| ||| | |||||    
T  11502664 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcttcctttaatctaccggcatgaatgtg 11502565  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaat 151  Q
    || |||||||    | | |||| | ||| |||||||||||||||||||    
T  11502564 tccttctaaagccggctccatcgcatgggtgtgaactccattaagaat 11502517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 6 - 105
Target Start/End: Original strand, 19072562 - 19072661
Alignment:
Q  6 ttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtc 105  Q
    ||||||| || |||||||||| ||||||||| |   |||||||||| ||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||||    
T  19072562 ttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtc 19072661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 3404948 - 3404839
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   ||||| |||| ||||| ||||| ||||||| | ||||||||||||||||  ||||| |||||    
T  3404948 tcttcaaatgtatcaaaatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctactggcaagaatgtg 3404849  T
Q  104 tctttctaaa 113  Q
    || |||||||    
T  3404848 tccttctaaa 3404839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 41024357 - 41024248
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   ||||| |||| ||||| ||||| ||||||  | ||||||||||||||||| ||||| |||||    
T  41024357 tcttcaaatgtatcaaaatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttttcgtcctcctttaatctacctgcaagaatgtg 41024258  T
Q  104 tctttctaaa 113  Q
    || |||||||    
T  41024257 tccttctaaa 41024248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 4769282 - 4769178
Alignment:
Q  10 aatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttc 109  Q
    |||||| |||||||||| ||| ||||| |   |||||||||| ||||| ||||| ||||||| | ||||||||||||||||| | ||| ||||||| |||    
T  4769282 aatttatcaaaatatttcttgaaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggtaagaatgtgtccttc 4769183  T
Q  110 taaac 114  Q
    |||||    
T  4769182 taaac 4769178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 202
Target Start/End: Original strand, 49565367 - 49565565
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||| ||||| ||| | ||||||| | ||||||||||||||| | ||||| |||||    
T  49565367 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctatcggcaagaatgtg 49565466  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  49565467 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 49565565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 204
Target Start/End: Original strand, 51643401 - 51643603
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||||||| |||||     |||||||||| ||||| ||||| ||||||| | ||||||||||||||||  ||||| |||||    
T  51643401 tcttcaaatgtatcaaaatattttttgaaagcattttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctactggcaagaatgtg 51643500  T
Q  104 tctttctaaa-cttcgttacatctcttggttgtg-aactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatga 201  Q
    || || |||| |   | | |||| | || ||||| ||||||||||||||| || |||||| | || ||||||||| ||||  ||||| ||| || |||||    
T  51643501 tccttataaagccgggctccatcgcatgtttgtgaaactccattaagaatgttcaatctcaattcctttgtttgcttactttgatatccactaatcatga 51643600  T
Q  202 aca 204  Q
    |||    
T  51643601 aca 51643603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 204
Target Start/End: Complemental strand, 17140622 - 17140547
Alignment:
Q  129 tggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 204  Q
    ||||||||||||||||||||||| || |||| | | || ||||||||||||||  ||||| ||| |||||||||||    
T  17140622 tggttgtgaactccattaagaatgttcaatccccattcctttgtttgcctactttgatatccactaaccatgaaca 17140547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 85
Target Start/End: Original strand, 38463741 - 38463821
Alignment:
Q  5 cttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaa 85  Q
    |||||||| || |||||||||||||||||||| |   |||||||||| ||||| | ||| ||||||| | |||||||||||    
T  38463741 cttcaaatgtatcaaaatattttttggaagcatcttgctcttggtcaagtcacgtgcaatcttcttgtcgtcctcctttaa 38463821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 4 - 205
Target Start/End: Original strand, 17997075 - 17997276
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    |||||||||||| |||||||||| |||||||||||   |||||||||| ||||| ||||| ||||||  ||||||||||||||||||| |||||||||||    
T  17997075 tcttcaaatttatcaaaatatttcttggaagcaccttgctcttggtcaagtcacgtacaatcttcttatcatcctcctttaatctaccagcaagcatgtg 17997174  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 203  Q
    || |||||||    | | |||| | |||||| ||||| ||| |||||| || |||||| | || |||||||| |||||||||||| ||| |||| |||||    
T  17997175 tccttctaaagccggctccatcgcatggttgcgaacttcatgaagaatgttcaatctccattcctttgtttgtctactaagatatccactaaccttgaac 17997274  T
Q  204 at 205  Q
    ||    
T  17997275 at 17997276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 4 - 204
Target Start/End: Original strand, 41007883 - 41008083
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||| ||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  41007883 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 41007982  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 203  Q
    || |||||||    | |||||| | ||||||||||||||||||||||| || ||||   | || ||||||||| ||||  ||||| ||| || |||||||    
T  41007983 tcattctaaagccggctacatcgcatggttgtgaactccattaagaatgttcaatcctcattcctttgtttgcttactttgatatccactaatcatgaac 41008082  T
Q  204 a 204  Q
    |    
T  41008083 a 41008083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 204
Target Start/End: Original strand, 12907397 - 12907595
Alignment:
Q  6 ttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtc 105  Q
    ||||||| || || ||||||| ||||||||| |   |||||||||| ||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||||    
T  12907397 ttcaaatgtatcagaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtc 12907496  T
Q  106 tttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 204  Q
     |||||||    | | |||| | ||||||||||||||||||||||| || |||||| | || ||||||||| ||||  ||||| ||| || ||||||||    
T  12907497 cttctaaagccggctccatcgcatggttgtgaactccattaagaatgttcaatctccattcctttgtttgcttactttgatatccactaatcatgaaca 12907595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 181
Target Start/End: Complemental strand, 436469 - 436292
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||| ||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  436469 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 436370  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctact 181  Q
    || |||||||    | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||    
T  436369 tccttctaaagccggctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttact 436292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 204
Target Start/End: Original strand, 11692716 - 11692917
Alignment:
Q  3 gtcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgt 102  Q
    |||||||||| || |||||||||| ||||||||| |   |||||||||| ||||| ||||| ||||||| | ||||||||||||||||| ||||| ||||    
T  11692716 gtcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgt 11692815  T
Q  103 gtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    ||| ||||||| |  | |  ||| | ||||||||||||||||||||||| || ||||   | || ||||||||| ||||  ||||| ||| || ||||||    
T  11692816 gtccttctaaagtcggctcgatcacatggttgtgaactccattaagaatgttcaatcctcattcctttgtttgcttactttgatatccactaatcatgaa 11692915  T
Q  203 ca 204  Q
    ||    
T  11692916 ca 11692917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 4 - 204
Target Start/End: Original strand, 43949185 - 43949385
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||| ||||  ||||| ||||||||| ||||||||||||||||| ||||| |||||    
T  43949185 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcatgtacaatcttcttgccgtcctcctttaatctaccggcaagaatgtg 43949284  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 203  Q
    || |||||||    | | | || | ||||||||||||||||||| ||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  43949285 tccttctaaagccggctccttcgcatggttgtgaactccattaataatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaac 43949384  T
Q  204 a 204  Q
    |    
T  43949385 a 43949385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 7264190 - 7263992
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| |||||| || |   |||||||||| ||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  7264190 tcttcaaatgtatcaaaatatttcttggaaccatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 7264091  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    || |||||||    ||| |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  7264090 tccttctaaagccggttccatgagatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 7263992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 3802469 - 3802578
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||| ||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  3802469 tcttcaaatgtatcaaaatatttattggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 3802568  T
Q  104 tctttctaaa 113  Q
    || |||||||    
T  3802569 tccttctaaa 3802578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 27275263 - 27275372
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||| ||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  27275263 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 27275362  T
Q  104 tctttctaaa 113  Q
    || |||||||    
T  27275363 tccttctaaa 27275372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 204
Target Start/End: Complemental strand, 24750816 - 24750616
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   |||| |||||  |||  ||||| ||||||| ||||||||||||||||||| ||||| |||||    
T  24750816 tcttcaaatgtatcaaaatatttcttggaagcatcttgctctcggtcaattcatgtacaatcttcttgtcatcctcctttaatctaccggcaagaatgtg 24750717  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 203  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  24750716 tccttctaaatccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaac 24750617  T
Q  204 a 204  Q
    |    
T  24750616 a 24750616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 202
Target Start/End: Original strand, 212344 - 212542
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||| ||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  212344 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 212443  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  212444 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 212542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 202
Target Start/End: Original strand, 10623357 - 10623555
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||| ||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  10623357 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 10623456  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  10623457 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 10623555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 5348325 - 5348216
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||| ||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  5348325 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 5348226  T
Q  104 tctttctaaa 113  Q
    || |||||||    
T  5348225 tccttctaaa 5348216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 34920685 - 34920794
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||| ||||| ||||| ||||||| | |||||||||||| |||| | ||| |||||    
T  34920685 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatttaccggtaagaatgtg 34920784  T
Q  104 tctttctaaa 113  Q
    || |||||||    
T  34920785 tccttctaaa 34920794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 41561170 - 41561061
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||| ||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  41561170 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 41561071  T
Q  104 tctttctaaa 113  Q
    || |||||||    
T  41561070 tccttctaaa 41561061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 45476516 - 45476407
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||  || |||||||||| ||| ||||| |   |||||||||| ||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  45476516 tcttcaaacgtatcaaaatatttcttgtaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 45476417  T
Q  104 tctttctaaa 113  Q
    || |||||||    
T  45476416 tccttctaaa 45476407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 39795128 - 39794930
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   || || |||| ||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  39795128 tcttcaaatgtatcaaaatatttcttggaagcatcttgctttttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 39795029  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
     | |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  39795028 cccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcttttgtttgcttactttgatatccactaatcatgaa 39794930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 38946921 - 38946723
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||| | || ||||||||||  |||||||| |   |||||||||| ||||| ||| | |||||||   ||||||||||||||||| ||||| |||||    
T  38946921 tcttcaagtgtatcaaaatatttcatggaagcatcttgctcttggtcaagtcacgtacgatcttcttgttgtcctcctttaatctaccggcaagaatgtg 38946822  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  38946821 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 38946723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 34920802 - 34920875
Alignment:
Q  131 gttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 204  Q
    ||||||||||||||||||||| || |||||| | || ||||||||| ||||  ||||| ||| || ||||||||    
T  34920802 gttgtgaactccattaagaatgttcaatctccattcctttgtttgcttactttgatatccactaatcatgaaca 34920875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 4 - 204
Target Start/End: Complemental strand, 8400744 - 8400544
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    |||||||||||| ||||||||||||||| | || |   |||||||||| ||||| ||||| ||||||| |||||||||||||| |||| ||||| |||||    
T  8400744 tcttcaaatttatcaaaatattttttggtaacatcttgctcttggtcaagtcacctacaatcttcttgtcatcctcctttaatgtaccagcaagaatgtg 8400645  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 203  Q
    || |||||||    | | |||| | ||||||||||||||||| | ||| || |||| | | || ||||||||||||||||||||| ||| ||||||||||    
T  8400644 tccttctaaagccggctccatcgcatggttgtgaactccattgaaaatgttcaatccccattcttttgtttgcctactaagatatccactaaccatgaac 8400545  T
Q  204 a 204  Q
    |    
T  8400544 a 8400544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 215
Target Start/End: Original strand, 43827509 - 43827720
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    |||||||||||| |||||||||| ||||||||| |   | |||||||| ||||| ||||| ||||||  | ||||||||||||||||| | ||| |||||    
T  43827509 tcttcaaatttatcaaaatatttcttggaagcatcttgcacttggtcaagtcacgtacaatcttcttttcgtcctcctttaatctaccggtaagaatgtg 43827608  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 203  Q
    || |||||||  | | | | || | ||||||||||||||||||||||| || |||| | | || |||||||| |||||||||||| ||| ||||||||||    
T  43827609 tcattctaaagctggctccttcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgtctactaagatatccactaaccatgaac 43827708  T
Q  204 atacacctacat 215  Q
    | ||||| ||||    
T  43827709 aaacacccacat 43827720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 204
Target Start/End: Complemental strand, 47062041 - 47061841
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||| ||||||||||| ||| ||| | ||||||||||||||||| ||||| |||||    
T  47062041 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacatacaatctttttgtcgtcctcctttaatctaccggcaagaatgtg 47061942  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 203  Q
    || ||| ||| |  | | |||| | ||||||||||||||||||||||| || ||||   | || ||||||||| ||||  ||||| ||| || |||||||    
T  47061941 tccttcaaaagtcggctccatcgcatggttgtgaactccattaagaatgttcaatcctcattcctttgtttgcttactttgatatccactaatcatgaac 47061842  T
Q  204 a 204  Q
    |    
T  47061841 a 47061841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 18106546 - 18106348
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   ||||| |||| ||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  18106546 tcttcaaatgtatcaaaatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctacctgcaagaatgtg 18106447  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  18106446 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 18106348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 21800156 - 21799959
Alignment:
Q  18 aaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttc 117  Q
    ||||||||||||||| |||||   |||||| | | ||||| || ||  ||||||  ||||||||||||||||||  ||| |||||||| |||||||        
T  21800156 aaaatattttttggatgcaccttgctcttgattaagtcacgtataattttcttgttatcctcctttaatctaccgacaaacatgtgtccttctaaagccg 21800057  T
Q  118 gttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacat 215  Q
      | |||| | ||||||||||||||||||| ||| || |||||| | |  ||||||| ||||||||||||| ||| |||||||||||| |||| ||||    
T  21800056 actccatcgcatggttgtgaactccattaacaatgttcaatctccattgctttgttttcctactaagatatccactaaccatgaacatgcacccacat 21799959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 202
Target Start/End: Original strand, 617652 - 617850
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||| ||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  617652 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 617751  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  617752 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 617850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 30787697 - 30787499
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||| ||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  30787697 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 30787598  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  30787597 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 30787499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 202
Target Start/End: Original strand, 43623038 - 43623236
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||| ||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  43623038 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 43623137  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  43623138 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 43623236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 45764537 - 45764339
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||| ||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  45764537 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 45764438  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  45764437 tcattctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 45764339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 15060771 - 15060662
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||  ||||||||| |   ||||| |||| ||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  15060771 tcttcaaatgtatcaaaatattccttggaagcatcttgctctttgtcaagtcacttacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 15060672  T
Q  104 tctttctaaa 113  Q
    || |||||||    
T  15060671 tccttctaaa 15060662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 152
Target Start/End: Original strand, 20908433 - 20908568
Alignment:
Q  17 caaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaactt 116  Q
    ||||||||||||| |  |||||||||||||||| | |||||  |||| ||||||| |||||||| ||||||| || ||||| ||||| | ||||||  ||    
T  20908433 caaaatatttttttgttgcaccaaactcttggtaaagtcacgcacaatcttcttgtcatcctcccttaatcttcctgcaagaatgtgcccttctaacatt 20908532  T
Q  117 cgttacatctcttggttgtgaactccattaagaata 152  Q
         | |||| ||||||||||||||||||||||||    
T  20908533 gccgtcgtctcatggttgtgaactccattaagaata 20908568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 42500565 - 42500367
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||| ||||| |    |||| |||| ||||| ||||| ||||||| | ||||||||||||||||| ||||| ||||     
T  42500565 tcttcaaatgtatcaaaatatttcttgaaagcatcttgatctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtt 42500466  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||||| | || ||||||||| ||||  ||||| ||| || ||||||    
T  42500465 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatctccattcctttgtttgcttactttgatatccactaatcatgaa 42500367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 3762062 - 3761964
Alignment:
Q  5 cttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| | |||||||||||||||  ||| |||||||||||||| || || || || ||| ||| |||| ||| ||||||| ||| ||||||||||    
T  3762062 cttcaaattcatcaaaatattttttggctgcatcaaactcttggtcaagttacctagaatctttttgtcatcttcccttaatcttccctcaagcatgtg 3761964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 88
Target Start/End: Original strand, 16794516 - 16794600
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatct 88  Q
    |||||||||||  |||||||||||||||   ||||||||| ||||||| ||||  ||||| ||||||| | |||||| |||||||    
T  16794516 tcttcaaatttgtcaaaatattttttggtttcaccaaactattggtcaagtcatgtacaatcttcttgtcgtcctccattaatct 16794600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 8194183 - 8194276
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaag 97  Q
    |||||||||||  |||||||||||||||   |||| |||| ||| ||| ||||  ||||| ||||||| | |||||| ||||||| ||||||||    
T  8194183 tcttcaaatttgtcaaaatattttttggtttcaccgaactattgctcaagtcatgtacaatcttcttgtcgtcctccattaatcttcccgcaag 8194276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 4 - 204
Target Start/End: Complemental strand, 7169058 - 7168858
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||| ||||| ||||| | ||||| | ||||||||||||||||  ||||| ||||     
T  7169058 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcatcttgtcgtcctcctttaatctactagcaagaatgta 7168959  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 203  Q
    || ||||||| |  | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||||||||  ||||| ||| ||||||||||    
T  7168958 tccttctaaagtcggctccatcgcatggttgtgaactccattaagaatgttcaatccccactcctttgtttgcctactttgatatccactaaccatgaac 7168859  T
Q  204 a 204  Q
    |    
T  7168858 a 7168858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 4 - 204
Target Start/End: Original strand, 35965648 - 35965848
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||| ||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  35965648 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 35965747  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 203  Q
    || |||||||    | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  35965748 tccttctaaagccggctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaac 35965847  T
Q  204 a 204  Q
    |    
T  35965848 a 35965848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 4 - 204
Target Start/End: Original strand, 39751931 - 39752131
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||| ||||| ||||| ||||||| | ||||||||||||||||| |||   || ||    
T  39751931 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcataaatatg 39752030  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 203  Q
    || |||||||    ||| |||  | ||||||||||||||||||||||| || |||| | | |||||||||||| ||||  ||||| ||| || |||||||    
T  39752031 tcattctaaagccggttccattgcatggttgtgaactccattaagaatgttcaatccccattcatttgtttgcttactttgatatccaccaatcatgaac 39752130  T
Q  204 a 204  Q
    |    
T  39752131 a 39752131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 4 - 204
Target Start/End: Complemental strand, 45455534 - 45455334
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| |||||||||     |||||||||| ||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  45455534 tcttcaaatgtatcaaaatatttcttggaagcattttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 45455435  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 203  Q
    || ||||||| |  | | |||| | ||||||| ||||||||||||||| |  |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  45455434 tccttctaaagtcggctccatcgcatggttgttaactccattaagaatgtccaatccccattcctttgtttgcttactttgatatccactaatcatgaac 45455335  T
Q  204 a 204  Q
    |    
T  45455334 a 45455334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 152
Target Start/End: Original strand, 14401676 - 14401825
Alignment:
Q  5 cttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcaca--tacaagcttcttgccatcctcctttaatctacccgcaagcatgt 102  Q
    ||||||||| | |||||||||||||||  |||||||||||||||||| |||| |  ||||| ||||||| |||| ||| ||||||| || ||||| ||||    
T  14401676 cttcaaattcatcaaaatattttttggtggcaccaaactcttggtcaagtcatatgtacaatcttcttgtcatcatcccttaatcttcctgcaagaatgt 14401775  T
Q  103 gtctttctaaacttcgttacatctcttggttgtgaactccattaagaata 152  Q
    | | |||||||||| |   ||  || ||||||||||||||||||||||||    
T  14401776 gccattctaaacttggcaccaattcatggttgtgaactccattaagaata 14401825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 22581048 - 22580914
Alignment:
Q  17 caaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaactt 116  Q
    |||||||||| ||||||||| |   |||||||||| ||||| ||||| ||||||| | ||||||||||||||||| ||||| ||||||| ||||||| |     
T  22581048 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagtc 22580949  T
Q  117 cgttacatctcttggttgtgaactccattaagaat 151  Q
     | | |||| | ||||||| |||||||||||||||    
T  22580948 ggctccatcgcatggttgtaaactccattaagaat 22580914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 204
Target Start/End: Original strand, 43689074 - 43689274
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| || |||||| |   |||||||||| ||||| ||||| ||||||| | ||||| ||||||||||| ||||| |||||    
T  43689074 tcttcaaatgtatcaaaatatttcttcgaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcttttaatctaccggcaagaatgtg 43689173  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 203  Q
    || |||||||      | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  43689174 tccttctaaagccgactccatcgcatggttgtgaactccattaagaatgttaaatccccattcctttgtttgcttactttgatatccactaatcatgaac 43689273  T
Q  204 a 204  Q
    |    
T  43689274 a 43689274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 181
Target Start/End: Original strand, 2145948 - 2146070
Alignment:
Q  59 tacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaat 158  Q
    ||||| ||||||| | ||||||||||||||||| ||||| || |||| ||||||| |  | | |||| | ||||||||||||||||||| ||| || |||    
T  2145948 tacaatcttcttgtcgtcctcctttaatctaccggcaagaatatgtccttctaaagtcggctccatcgcatggttgtgaactccattaaaaatgttcaat 2146047  T
Q  159 ctcgaatcatttgtttgcctact 181  Q
    ||| | |||||||||||| ||||    
T  2146048 ctccattcatttgtttgcttact 2146070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 7341237 - 7341039
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||| ||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  7341237 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 7341138  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  7341137 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 7341039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 202
Target Start/End: Original strand, 8422759 - 8422957
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||| ||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  8422759 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 8422858  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    || |||||||    | | |||    | ||||||||||||||||||||| ||||||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  8422859 tcattctaaagccggctccatgggatagttgtgaactccattaagaatgtttaatccccattcctttgtttgcttactttgatatccactaatcatgaa 8422957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 202
Target Start/End: Original strand, 30304513 - 30304711
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||| ||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  30304513 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 30304612  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  30304613 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 30304711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 202
Target Start/End: Original strand, 32377811 - 32378009
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||| ||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  32377811 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 32377910  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  32377911 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 32378009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 202
Target Start/End: Original strand, 32431768 - 32431966
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||| ||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  32431768 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 32431867  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  32431868 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 32431966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 1115930 - 1115821
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||| ||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  1115930 tcttcaattgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtactatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 1115831  T
Q  104 tctttctaaa 113  Q
    || |||||||    
T  1115830 tccttctaaa 1115821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 9e-23; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 6 - 204
Target Start/End: Complemental strand, 18607152 - 18606954
Alignment:
Q  6 ttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtc 105  Q
    ||||||| || |||||||||| ||||||||| |   |||||||||| ||||| ||||| ||||||| | ||||||||||||||| |  |||| |||||||    
T  18607152 ttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctatcgacaagaatgtgtc 18607053  T
Q  106 tttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 204  Q
     ||||||| |  | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||    
T  18607052 cttctaaagtcggctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaaca 18606954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 28251054 - 28250856
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||| ||||| ||||| ||||||| | ||||||||||||||| | ||||| |||||    
T  28251054 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctatcggcaagaatgtg 28250955  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    || |||||||  | | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  28250954 tccttctaaagctggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 28250856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 6 - 200
Target Start/End: Complemental strand, 24220324 - 24220128
Alignment:
Q  6 ttcaaatttaacaaaatattttttggaagcaccaaa--ctcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    |||||||||| |||||||||| ||||||||| |  |  |||||||||| ||||| || ||  |||||| | |||||||||||||||||  |||| |||||    
T  24220324 ttcaaatttatcaaaatatttcttggaagcatcttatgctcttggtcaagtcacgtataattttcttgtcgtcctcctttaatctaccgacaagaatgtg 24220225  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatg 200  Q
    || |||||||      | |||| | |||||||||||| |||||||||| || |||| | | |||||||||| ||||||||||||| ||| |||||||    
T  24220224 tccttctaaagccgactccatcgcatggttgtgaactgcattaagaattttcaatccccattcatttgttttcctactaagatatccactaaccatg 24220128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 151
Target Start/End: Complemental strand, 31147480 - 31147333
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| ||  ||||||||  ||||||||| |   |||||| ||| ||||| ||||| ||||||| ||| ||||||||||||||| ||||| |||||    
T  31147480 tcttcaaatgtataaaaatattacttggaagcatcttgctcttgatcaagtcacgtacaatcttcttgtcattctcctttaatctaccggcaagaatgtg 31147381  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaat 151  Q
    || ||||||| |  | | |||| | |||||||||||||||||||||||    
T  31147380 tccttctaaagtcggctccatcgcatggttgtgaactccattaagaat 31147333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 202
Target Start/End: Original strand, 1611654 - 1611852
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||| ||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  1611654 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 1611753  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  1611754 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 1611852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 21358250 - 21358359
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||| ||||  ||||| ||||||| | ||||||||||||||| | ||||| |||||    
T  21358250 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcatgtacaatcttcttgtcgtcctcctttaatctatcggcaagaatgtg 21358349  T
Q  104 tctttctaaa 113  Q
    || |||||||    
T  21358350 tccttctaaa 21358359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 23962232 - 23962341
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||| ||||  ||||| ||||||| | ||||||||||||||| | ||||| |||||    
T  23962232 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcatgtacaatcttcttgtcgtcctcctttaatctatcggcaagaatgtg 23962331  T
Q  104 tctttctaaa 113  Q
    || |||||||    
T  23962332 tccttctaaa 23962341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 152
Target Start/End: Original strand, 34111598 - 34111713
Alignment:
Q  37 ccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtg 136  Q
    ||||||||||||||| ||||| ||||| ||||| | |||| ||||||||||| || ||||| || |  | ||||||  || |   |||||| ||||||||    
T  34111598 ccaaactcttggtcaagtcacgtacaatcttctagtcatcttcctttaatcttcctgcaagaattttcccttctaactttggcgccatctcatggttgtg 34111697  T
Q  137 aactccattaagaata 152  Q
    ||||||||||||||||    
T  34111698 aactccattaagaata 34111713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 204
Target Start/End: Complemental strand, 35243636 - 35243561
Alignment:
Q  129 tggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 204  Q
    ||||||||||||||||||||||| || |||| | | |||||||||||| ||||  ||||| ||| || ||||||||    
T  35243636 tggttgtgaactccattaagaatgttcaatccccattcatttgtttgcttactttgatatccactaatcatgaaca 35243561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 202
Target Start/End: Original strand, 13387722 - 13387795
Alignment:
Q  129 tggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| |||||| ||||||    
T  13387722 tggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacgaatcatgaa 13387795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 16260 - 16369
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||| ||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  16260 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcttcctcctttaatctaccggcaagaatgtg 16359  T
Q  104 tctttctaaa 113  Q
    || |||||||    
T  16360 tccttctaaa 16369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0494 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 2039 - 1841
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||| ||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  2039 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 1940  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  1939 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 1841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 33967 - 33769
Alignment:
Q  4 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaggtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 103  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||| ||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  33967 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 33868  T
Q  104 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 202  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  33867 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 33769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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