View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_294 (Length: 230)
Name: NF11385A_low_294
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_294 |
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Alignment Details
Target: chr8 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 32956992 - 32956891
Alignment:
| Q |
1 |
aattggatttagtaaagctaaataaaagcctcgtgatcgaagaaggcagatcctggaagactgttccctctgtcacgtgcccacttttgactacccaatc |
100 |
Q |
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| T |
32956992 |
aattggatttagtaaagctaaataaaagcctcgtgatcgaagaaggcagatcctggaagactgttccctctgtcacgtgcccacttttgactacccaatc |
32956893 |
T |
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| Q |
101 |
aa |
102 |
Q |
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|| |
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| T |
32956892 |
aa |
32956891 |
T |
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Back To:
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Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 32956825 - 32956769
Alignment:
| Q |
168 |
ataaattcaaaccatttcatacaacattgcaacatactaatattgtcacactcattc |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32956825 |
ataaattcaaaccatttcatacaacattgcaacatactaatattgtcacaatcattc |
32956769 |
T |
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