View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_3 (Length: 558)
Name: NF11385A_low_3
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 6e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 9 - 196
Target Start/End: Original strand, 30877815 - 30878002
Alignment:
| Q |
9 |
gcatctccaagaatatcataaccttccatttccatagcaaagtgaaaagagaaatgaaaaaggagagttgtttgtggggaccaaacacaggagacaacct |
108 |
Q |
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| T |
30877815 |
gcatctccaaatatatcataaccttccatttccatagcaaagtgaaaagagaaatgaaaaaggagagttgtttgtggggaccaaacacaggagacaacct |
30877914 |
T |
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| Q |
109 |
tggaaacaatggaataaggagaggtgtttgttctgtgtcagagttgttttggagtgtgatagtgatgaaaatgacagtgtcagtgaac |
196 |
Q |
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| T |
30877915 |
tggaaacaatggaataaggagaggtgtttgttctgtgtcagagttgttttggagtgtgatagtgatgaaaatgacagtgtcagtgaac |
30878002 |
T |
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Target: chr3 (Bit Score: 123; Significance: 6e-63; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 206 - 362
Target Start/End: Original strand, 1109017 - 1109169
Alignment:
| Q |
206 |
ctgtgaacgatggttcagacatatgaatgtgatctttgcagttcacaatgtgtctgaaccgattgagatcaataatggcatggaaccccttcctgcagat |
305 |
Q |
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| T |
1109017 |
ctgtgaacgatggttcagacatatgaatgtgatctttgcagttcacaatgtgtctgaacagattgagatcaataatggcatggaaccccttcctgcagat |
1109116 |
T |
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| Q |
306 |
gctacagatcatgtgcagagaaatacgtataaggatgtgaagaagaaagcatatatt |
362 |
Q |
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| T |
1109117 |
gctacagat---gt-cagagaaatatgtataacgatgtgaagaagaaagcatatatt |
1109169 |
T |
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