View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11385A_low_304 (Length: 229)

Name: NF11385A_low_304
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11385A_low_304
NF11385A_low_304
[»] chr4 (4 HSPs)
chr4 (1-223)||(54396725-54396947)
chr4 (20-75)||(23587525-23587580)
chr4 (29-75)||(35132778-35132824)
chr4 (6-75)||(23596377-23596446)
[»] chr2 (4 HSPs)
chr2 (29-82)||(12235019-12235072)
chr2 (29-78)||(7542556-7542605)
chr2 (32-75)||(12245198-12245241)
chr2 (35-75)||(16657309-16657349)
[»] chr7 (11 HSPs)
chr7 (8-75)||(39985955-39986022)
chr7 (29-75)||(7877525-7877571)
chr7 (6-78)||(8017202-8017274)
chr7 (29-81)||(10494160-10494212)
chr7 (32-72)||(17260574-17260614)
chr7 (29-72)||(6789842-6789885)
chr7 (32-78)||(8659696-8659742)
chr7 (32-81)||(1301797-1301846)
chr7 (6-75)||(8102974-8103043)
chr7 (32-81)||(13333242-13333291)
chr7 (32-72)||(8585501-8585541)
[»] chr1 (1 HSPs)
chr1 (20-78)||(4678347-4678405)


Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 54396725 - 54396947
Alignment:
Q  1 aatagcaccagcagccttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcactggatgaccaagaaaagcttca 100  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396725 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcactggatgaccaagaaaagcttca 54396824  T
Q  101 gcaactgctctcatcttgatcaacaccagtgaagaaatttcctctgctgcaaatttcttctcttcacctttgtaattaacaacgatcataggtttttcag 200  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396825 gcaacttctctcatcttgatcaacaccattgaagaaatttcctctgctgcaaatttcttctcttcacctttgtaattaacaacgatcataggtttttcag 54396924  T
Q  201 cgggacctggaacgactttaaac 223  Q
    |||||||||||||||||||||||    
T  54396925 cgggacctggaacgactttaaac 54396947  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 23587580 - 23587525
Alignment:
Q  20 gtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 75  Q
    |||||||||||||| ||||| ||||| |||||||| ||||| ||||| ||||||||    
T  23587580 gtagcttgacgttgtgaatcgttgaagtaagcaggcacagttacaacggcattctt 23587525  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 35132778 - 35132824
Alignment:
Q  29 cgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 75  Q
    |||||||||||| | ||||||||||| ||||||||||| ||||||||    
T  35132778 cgttgagaatcactaaaataagcaggcacagtaacaactgcattctt 35132824  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 23596446 - 23596377
Alignment:
Q  6 caccagcagccttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 75  Q
    |||||||| |||| |||||||||||||| ||||| ||||| || ||||| || || ||||| ||||||||    
T  23596446 caccagcatccttagtagcttgacgttgtgaatcgttgaagtatgcaggcacggttacaacggcattctt 23596377  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 12235019 - 12235072
Alignment:
Q  29 cgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcactgga 82  Q
    |||||||||||||||||||||||||| || |||||||| |||||||| ||||||    
T  12235019 cgttgagaatcattgaaataagcaggcacggtaacaactgcattcttaactgga 12235072  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 7542556 - 7542605
Alignment:
Q  29 cgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcac 78  Q
    |||||||||||||| ||||||||||| ||||||||||| |||||| ||||    
T  7542556 cgttgagaatcattaaaataagcaggtacagtaacaactgcattcgtcac 7542605  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 12245241 - 12245198
Alignment:
Q  32 tgagaatcattgaaataagcaggaacagtaacaacagcattctt 75  Q
    ||||||||| | ||||||||||| ||||||||||||||||||||    
T  12245241 tgagaatcactaaaataagcaggtacagtaacaacagcattctt 12245198  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 16657349 - 16657309
Alignment:
Q  35 gaatcattgaaataagcaggaacagtaacaacagcattctt 75  Q
    ||||||||||| ||||| || ||||||||||||||||||||    
T  16657349 gaatcattgaagtaagctggcacagtaacaacagcattctt 16657309  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 39985955 - 39986022
Alignment:
Q  8 ccagcagccttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 75  Q
    |||||| |||| ||||||||||| || || ||||| || |||||||| ||||||||||||||||||||    
T  39985955 ccagcatccttggtagcttgacgctgggagtcattaaagtaagcagggacagtaacaacagcattctt 39986022  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 7877571 - 7877525
Alignment:
Q  29 cgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 75  Q
    ||||||||||||||||||||||| || ||||||||||| ||||||||    
T  7877571 cgttgagaatcattgaaataagccggcacagtaacaactgcattctt 7877525  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 8017274 - 8017202
Alignment:
Q  6 caccagcagccttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcac 78  Q
    |||| ||| |||| || |||||||| || ||||||||||| ||||| ||||| |||||||| |||||||||||    
T  8017274 caccggcatcctttgtggcttgacgctgcgaatcattgaagtaagctggaactgtaacaacggcattcttcac 8017202  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 10494212 - 10494160
Alignment:
Q  29 cgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcactgg 81  Q
    ||||||||||| ||||| ||||| || |||||||||||||||||||| |||||    
T  10494212 cgttgagaatcgttgaagtaagccggcacagtaacaacagcattcttgactgg 10494160  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 17260574 - 17260614
Alignment:
Q  32 tgagaatcattgaaataagcaggaacagtaacaacagcatt 72  Q
    ||||||||||||||||||||||||||||||| |||| ||||    
T  17260574 tgagaatcattgaaataagcaggaacagtaataacaacatt 17260614  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 6789842 - 6789885
Alignment:
Q  29 cgttgagaatcattgaaataagcaggaacagtaacaacagcatt 72  Q
    |||||||||||||||||||||||||| ||||||| ||| |||||    
T  6789842 cgttgagaatcattgaaataagcaggcacagtaataactgcatt 6789885  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 8659696 - 8659742
Alignment:
Q  32 tgagaatcattgaaataagcaggaacagtaacaacagcattcttcac 78  Q
    |||||||||||||| || ||||| || ||||||||||||||||||||    
T  8659696 tgagaatcattgaactatgcaggcactgtaacaacagcattcttcac 8659742  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 1301797 - 1301846
Alignment:
Q  32 tgagaatcattgaaataagcaggaacagtaacaacagcattcttcactgg 81  Q
    ||||||||||||||||  ||||| |||||||||||||||||  |||||||    
T  1301797 tgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactgg 1301846  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 8102974 - 8103043
Alignment:
Q  6 caccagcagccttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 75  Q
    |||||||| | || || |||||||| |||||||||||||| |||||||| ||||| || || ||||||||    
T  8102974 caccagcatctttagttgcttgacgctgagaatcattgaagtaagcagggacagtgacgacggcattctt 8103043  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 13333291 - 13333242
Alignment:
Q  32 tgagaatcattgaaataagcaggaacagtaacaacagcattcttcactgg 81  Q
    |||||||||||||| ||||| || ||||||||||| |||||||| |||||    
T  13333291 tgagaatcattgaagtaagccggcacagtaacaacggcattcttgactgg 13333242  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 8585541 - 8585501
Alignment:
Q  32 tgagaatcattgaaataagcaggaacagtaacaacagcatt 72  Q
    ||||||||||||||||||||||| ||||| ||||| |||||    
T  8585541 tgagaatcattgaaataagcaggcacagtcacaactgcatt 8585501  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 4678405 - 4678347
Alignment:
Q  20 gtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcac 78  Q
    |||||||  ||||||||||||||||| || ||||| |||||||||||  ||||||||||    
T  4678405 gtagcttttcgttgagaatcattgaagtatgcaggcacagtaacaacgacattcttcac 4678347  T

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