View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_319 (Length: 225)
Name: NF11385A_low_319
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_319 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 38567057 - 38567281
Alignment:
| Q |
1 |
gtcgactttcgagttccactttgtccaaccaatgctgtggttgttccgctcggtatatgaagagagaatccattaaatatcagctcctcaggtcttgccg |
100 |
Q |
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| T |
38567057 |
gtcgactttccacttccactttgtccaaccaatgctgtggttgttccgctcggtatatgaagagagaatccattaaatatcagctcctcaggtcttgccg |
38567156 |
T |
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| Q |
101 |
gataactgaaataaacttctttcaactctatttcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaat |
200 |
Q |
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| T |
38567157 |
gataactgaaataaacttctttcaactctatttcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaat |
38567256 |
T |
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| Q |
201 |
tgtctcaaacattttgtaagccgcc |
225 |
Q |
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| T |
38567257 |
tgtctcaaacattttgtaagccgcc |
38567281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 4 - 225
Target Start/End: Original strand, 38525935 - 38526156
Alignment:
| Q |
4 |
gactttcgagttccactttgtccaaccaatgctgtggttgttccgctcggtatatgaagagagaatccattaaatatcagctcctcaggtcttgccggat |
103 |
Q |
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||||||| | |||||||||||||||||||||| | |||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38525935 |
gactttccacttccactttgtccaaccaatgccgcggttgttccgcttgatatatgaagagagaatccattgaatatcagctcctcaggtcttgccggat |
38526034 |
T |
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| Q |
104 |
aactgaaataaacttctttcaactctatttcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaattgt |
203 |
Q |
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| T |
38526035 |
aactgaaataaacttctttcaactctatctcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaattgt |
38526134 |
T |
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| Q |
204 |
ctcaaacattttgtaagccgcc |
225 |
Q |
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| T |
38526135 |
ctcaaacattttgtaagccgcc |
38526156 |
T |
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Back To:
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