View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_327 (Length: 220)
Name: NF11385A_low_327
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_327 |
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| [»] scaffold0110 (3 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 13284 - 13065
Alignment:
| Q |
1 |
gcagcagcatgtgacaatatcaaattgtgagctacaatataaggctcagttcctgaatttccagcagtacaatttccatattcttttgaacaccttccag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13284 |
gcagcagcatgtgacaatatcaaattgtgagctacaatataaggctcagttcctgaatttccagcagtacaatttccatattcttttgaacaccttccag |
13185 |
T |
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| Q |
101 |
gggcaaaaaagccagtatcataaccaagtgcagcaataactcttggttcattgaaagtcatccagttcttaactctgtctccaaatgttttgaaacaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13184 |
gggcaaaaaagccagtatcataaccaagtgcagcaataactcttggttcattgaaagtcatccagttcttaactctgtctccaaatgttttgaaacaaaa |
13085 |
T |
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| Q |
201 |
atctgcataatccgcaaaat |
220 |
Q |
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|||||||||||||||||||| |
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| T |
13084 |
atctgcataatccgcaaaat |
13065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 21021 - 20802
Alignment:
| Q |
1 |
gcagcagcatgtgacaatatcaaattgtgagctacaatataaggctcagttcctgaatttccagcagtacaatttccatattcttttgaacaccttccag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21021 |
gcagcagcatgtgacaatatcaaattgtgagctacaatataaggctcagttcctgaatttccagcagtacaatttccatattcttttgaacaccttccag |
20922 |
T |
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| Q |
101 |
gggcaaaaaagccagtatcataaccaagtgcagcaataactcttggttcattgaaagtcatccagttcttaactctgtctccaaatgttttgaaacaaaa |
200 |
Q |
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| T |
20921 |
gggcaaaaaagccagtatcataaccaagtgcagcaataactcttggttcattgaaagtcatccagttcttaactctgtctccaaatgttttgaaacaaaa |
20822 |
T |
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| Q |
201 |
atctgcataatccgcaaaat |
220 |
Q |
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|||||||||||||||||||| |
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| T |
20821 |
atctgcataatccgcaaaat |
20802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #3
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 30141 - 29922
Alignment:
| Q |
1 |
gcagcagcatgtgacaatatcaaattgtgagctacaatataaggctcagttcctgaatttccagcagtacaatttccatattcttttgaacaccttccag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
30141 |
gcagcagcatgtgacaatatcaaattgtgagctacagtataaggctcagttcctgaatttccagctgtacaatttccatattcttttgaacatcttccag |
30042 |
T |
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| Q |
101 |
gggcaaaaaagccagtatcataaccaagtgcagcaataactcttggttcattgaaagtcatccagttcttaactctgtctccaaatgttttgaaacaaaa |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||| || |||||||| |
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| T |
30041 |
gggcaaaaaagccattatcataaccaagtgcagcaacaactcttggttcattgaaggtcatccaattcttaactctgtctccaaatgtcttaaaacaaaa |
29942 |
T |
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| Q |
201 |
atctgcataatccgcaaaat |
220 |
Q |
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|||||||||||||||||||| |
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| T |
29941 |
atctgcataatccgcaaaat |
29922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 31639108 - 31639059
Alignment:
| Q |
145 |
ggttcattgaaagtcatccagttcttaactctgtctccaaatgttttgaa |
194 |
Q |
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||||||||||| || ||||||| |||||||||||||||||| | |||||| |
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| T |
31639108 |
ggttcattgaaggtaatccagtgcttaactctgtctccaaaagctttgaa |
31639059 |
T |
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