View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11385A_low_334 (Length: 219)

Name: NF11385A_low_334
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11385A_low_334
NF11385A_low_334
[»] chr4 (2 HSPs)
chr4 (17-198)||(6612708-6612889)
chr4 (22-193)||(27015013-27015184)
[»] scaffold0381 (1 HSPs)
scaffold0381 (22-193)||(4599-4770)
[»] chr3 (2 HSPs)
chr3 (60-193)||(12530143-12530276)
chr3 (24-197)||(54565470-54565644)
[»] chr1 (2 HSPs)
chr1 (68-171)||(41327593-41327696)
chr1 (68-171)||(41337824-41337927)
[»] chr8 (1 HSPs)
chr8 (43-169)||(29383150-29383276)
[»] chr6 (4 HSPs)
chr6 (68-152)||(20916428-20916512)
chr6 (68-145)||(20916791-20916868)
chr6 (46-109)||(17395936-17395999)
chr6 (68-154)||(20926361-20926447)
[»] chr5 (1 HSPs)
chr5 (48-176)||(22790028-22790156)


Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 6612889 - 6612708
Alignment:
Q  17 aaatgaagcaaggccaccactcctagcggtgcaatcaacggaaaaacaggaatcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtgatact 116  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||    
T  6612889 aaataaagcaaggccaccactcctaccggtgcaatcaacggaaaaacaggaatcaaaaccaagcaagtaacgtaaaacttcaattttatttcgggatact 6612790  T
Q  117 agtgtctcacttaagaagagtacgtccggattgaagtggcgaacgagatattttaaatcaagagttgcgctcaggctaccca 198  Q
    ||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||| ||||||||||| |||||||||    
T  6612789 agtgtctcacttaagaagagtacgtccggattgaagtgctgaaggagatattttaaatcaggagttgcgctcgggctaccca 6612708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 22 - 193
Target Start/End: Original strand, 27015013 - 27015184
Alignment:
Q  22 aagcaaggccaccactcctagcggtgcaatcaacggaaaaacaggaatcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtgatactagtgt 121  Q
    ||||||| ||||| || |||  |||||||||||| |||||||| ||||||||||| ||||| || || ||||| ||||||||||||||    || | |||    
T  27015013 aagcaagaccaccgcttctattggtgcaatcaacagaaaaacaagaatcaaaaccgagcaaatatcgaaaaacttcaattttatttcggcgaaccaatgt 27015112  T
Q  122 ctcacttaagaagagtacgtccggattgaagtggcgaacgagatattttaaatcaagagttgcgctcaggct 193  Q
    ||||||||| ||||||| ||| ||||||||||| |||||||||||||| |||||| ||  ||||||| ||||    
T  27015113 ctcacttaaaaagagtatgtctggattgaagtgtcgaacgagatatttcaaatcaggaactgcgctcgggct 27015184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 22 - 193
Target Start/End: Complemental strand, 4770 - 4599
Alignment:
Q  22 aagcaaggccaccactcctagcggtgcaatcaacggaaaaacaggaatcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtgatactagtgt 121  Q
    ||||||| ||||| || |||  |||||||||||| |||||||| ||||||||||| ||||| || || ||||| ||||||||||||||    || | |||    
T  4770 aagcaagaccaccgcttctattggtgcaatcaacagaaaaacaagaatcaaaaccgagcaaatatcgaaaaacttcaattttatttcggcgaaccaatgt 4671  T
Q  122 ctcacttaagaagagtacgtccggattgaagtggcgaacgagatattttaaatcaagagttgcgctcaggct 193  Q
    ||||||||| ||||||| ||| ||||||||||| |||||||||||||| |||||| ||  ||||||| ||||    
T  4670 ctcacttaaaaagagtatgtctggattgaagtgtcgaacgagatatttcaaatcaggaactgcgctcgggct 4599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 60 - 193
Target Start/End: Original strand, 12530143 - 12530276
Alignment:
Q  60 aaacaggaatcaaaaccaagcaagtaacggaaaacgtcaattttatttcg-tgatactagtgtctcacttaagaagagtacgtccggattgaagtggcga 158  Q
    ||||| ||||||||||| ||||| || || ||| | |||||||||||||| ||| || | ||||| |||||| ||||||||||| ||||||||||| |||    
T  12530143 aaacaagaatcaaaaccgagcaaatatcgaaaagcttcaattttatttcggtga-accaatgtctgacttaaaaagagtacgtctggattgaagtgtcga 12530241  T
Q  159 acgagatattttaaatcaagagttgcgctcaggct 193  Q
    ||||||||||| |||||| ||  ||||||| ||||    
T  12530242 acgagatatttcaaatcaggaactgcgctcgggct 12530276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 197
Target Start/End: Original strand, 54565470 - 54565644
Alignment:
Q  24 gcaaggccaccactcctagcggtgcaatcaacggaaaaacaggaatcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtgatactagtgtct 123  Q
    |||||||||||||| ||| | || |||||||| ||||||||  |||||||| |||||| |||||| | | | ||||||||||| ||    |||| |||||    
T  54565470 gcaaggccaccacttctaccagtacaatcaacagaaaaacaaaaatcaaaatcaagcacgtaacgtagagcttcaattttattacgatggactaatgtct 54565569  T
Q  124 cacttaagaagagta-cgtccggattgaagtggcgaacgagatattttaaatcaagagttgcgctcaggctaccc 197  Q
    ||||||| || | ||  ||||||||| ||||| ||||| |  || |||||||||||| |||||||  ||||||||    
T  54565570 cacttaaaaataatagggtccggattaaagtgccgaactatgtactttaaatcaagaattgcgcttgggctaccc 54565644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 68 - 171
Target Start/End: Complemental strand, 41327696 - 41327593
Alignment:
Q  68 atcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtgatactagtgtctcacttaagaagagtacgtccggattgaagtggcgaacgagatat 167  Q
    ||||||||||||||||||||| ||| | ||||||||||||||    |||| | |||||||||||||||| | |||||||||||||||  |||| || |||    
T  41327696 atcaaaaccaagcaagtaacgtaaatcttcaattttatttcggtggactaatatctcacttaagaagaggaggtccggattgaagtgtagaactaggtat 41327597  T
Q  168 ttta 171  Q
    ||||    
T  41327596 ttta 41327593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 68 - 171
Target Start/End: Complemental strand, 41337927 - 41337824
Alignment:
Q  68 atcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtgatactagtgtctcacttaagaagagtacgtccggattgaagtggcgaacgagatat 167  Q
    ||||||||||||||||||||| ||| | ||||||||||||||    |||| | |||||||||||||||| | |||||||||||||||  |||| || |||    
T  41337927 atcaaaaccaagcaagtaacgtaaatcttcaattttatttcggtggactaatatctcacttaagaagaggaggtccggattgaagtgtagaactaggtat 41337828  T
Q  168 ttta 171  Q
    ||||    
T  41337827 ttta 41337824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 169
Target Start/End: Complemental strand, 29383276 - 29383150
Alignment:
Q  43 cggtgcaatcaacggaaaaacaggaatcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtgatactagtgtctcacttaagaagagtacgtc 142  Q
    |||||| ||||||  |||| || ||||||||||| ||||| ||||| ||| | ||||||||||||||    ||||||||||||||||| || |||| |||    
T  29383276 cggtgcgatcaacataaaagcaagaatcaaaacccagcaaataacgtaaatcttcaattttatttcggtggactagtgtctcacttaaaaatagtaggtc 29383177  T
Q  143 cggattgaagtggcgaacgagatattt 169  Q
    |  ||||||||  |||||||| |||||    
T  29383176 catattgaagtatcgaacgaggtattt 29383150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 152
Target Start/End: Complemental strand, 20916512 - 20916428
Alignment:
Q  68 atcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtgatactagtgtctcacttaagaagagtacgtccggattgaag 152  Q
    ||||||||||||||||||||| ||| | ||||||||||||||    |||| | |||||||||||||||| | |||||| ||||||    
T  20916512 atcaaaaccaagcaagtaacgtaaatcttcaattttatttcggtggactaatatctcacttaagaagaggaggtccgggttgaag 20916428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 145
Target Start/End: Complemental strand, 20916868 - 20916791
Alignment:
Q  68 atcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtgatactagtgtctcacttaagaagagtacgtccgg 145  Q
    ||||||||||||||||||||| ||| | ||||||||||||||    |||| | |||||||||||||||| | ||||||    
T  20916868 atcaaaaccaagcaagtaacgtaaatcttcaattttatttcggtggactaatatctcacttaagaagaggaggtccgg 20916791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 17395936 - 17395999
Alignment:
Q  46 tgcaatcaacggaaaaacaggaatcaaaaccaagcaagtaacggaaaacgtcaattttatttcg 109  Q
    |||||||||  |||||||| |||| ||||||||||| || ||| ||||| ||||||||||||||    
T  17395936 tgcaatcaaaagaaaaacaagaataaaaaccaagcatgttacgaaaaacttcaattttatttcg 17395999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 154
Target Start/End: Complemental strand, 20926447 - 20926361
Alignment:
Q  68 atcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtgatactagtgtctcacttaagaagagtacgtccggattgaagtg 154  Q
    ||||||||||||||| |||||  || | ||||||||||||||    |||| | |||||||||||||||| | ||| |||||||||||    
T  20926447 atcaaaaccaagcaaataacgtcaatcttcaattttatttcggtggactaatatctcacttaagaagaggaggtctggattgaagtg 20926361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 176
Target Start/End: Original strand, 22790028 - 22790156
Alignment:
Q  48 caatcaacggaaaaacaggaatcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtgatactagtgtctcacttaagaagagtacgtccggat 147  Q
    |||||||| ||||| ||  ||||||||||||||| || ||| ||| | ||||||||||| ||    |||| ||||||||||||||| | ||   ||||||    
T  22790028 caatcaacagaaaagcatcaatcaaaaccaagcaggtgacgtaaagcttcaattttattacggtggactaatgtctcacttaagaataatagaaccggat 22790127  T
Q  148 tgaagtggcgaacgagatattttaaatca 176  Q
    ||||||| ||||| || || |||||||||    
T  22790128 tgaagtgccgaactaggtactttaaatca 22790156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University