View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11385A_low_336 (Length: 218)

Name: NF11385A_low_336
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11385A_low_336
NF11385A_low_336
[»] chr5 (4 HSPs)
chr5 (70-216)||(2252675-2252821)
chr5 (1-47)||(43210240-43210286)
chr5 (1-47)||(19332819-19332865)
chr5 (1-39)||(40273074-40273112)
[»] chr2 (2 HSPs)
chr2 (1-46)||(32318837-32318882)
chr2 (1-44)||(3118333-3118376)
[»] chr6 (1 HSPs)
chr6 (1-48)||(3914313-3914360)
[»] chr8 (4 HSPs)
chr8 (1-46)||(32244033-32244078)
chr8 (1-44)||(3866048-3866091)
chr8 (1-48)||(6244069-6244116)
chr8 (1-46)||(44894303-44894348)
[»] chr3 (6 HSPs)
chr3 (1-46)||(33476083-33476128)
chr3 (1-46)||(44556530-44556575)
chr3 (1-48)||(31991424-31991471)
chr3 (1-44)||(41927620-41927663)
chr3 (1-45)||(8575791-8575835)
chr3 (2-47)||(52701519-52701564)
[»] chr7 (6 HSPs)
chr7 (1-44)||(37108036-37108079)
chr7 (1-47)||(8082164-8082210)
chr7 (1-47)||(8833068-8833114)
chr7 (1-47)||(38594857-38594903)
chr7 (1-46)||(1066037-1066082)
chr7 (1-40)||(42973998-42974037)
[»] chr4 (3 HSPs)
chr4 (1-43)||(44452444-44452486)
chr4 (1-46)||(34512922-34512967)
chr4 (1-47)||(28163616-28163662)
[»] chr1 (6 HSPs)
chr1 (1-47)||(25352312-25352358)
chr1 (4-47)||(52010221-52010264)
chr1 (1-40)||(52881953-52881992)
chr1 (1-47)||(12897006-12897052)
chr1 (1-47)||(11397390-11397436)
chr1 (1-46)||(27551404-27551449)


Alignment Details
Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 70 - 216
Target Start/End: Complemental strand, 2252821 - 2252675
Alignment:
Q  70 gagggtccagtgatcaagttagttgtacgtgtataacttcgaattgcatttccttgtgattttatttgtaaatgccatcttatgccatttccaattcaag 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2252821 gagggtccagtgatcaagttagttgtacgtgtataacttcgaattgcagttccttgtgattttatttgtaaatgccatcttatgccatttccaattcaag 2252722  T
Q  170 aaatgcatatcttattgtcttaccaaataccaatgcgtctgcagggc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2252721 aaatgcatatcttattgtcttaccaaataccaatgcgtctgcagggc 2252675  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 43210286 - 43210240
Alignment:
Q  1 tgatgtcttagatgaatttgcaagcgaaggttagaagagcgtcgccg 47  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||    
T  43210286 tgatgtcttagacgaattttcaagcgaaggttagaagagcgtcgccg 43210240  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 19332865 - 19332819
Alignment:
Q  1 tgatgtcttagatgaatttgcaagcgaaggttagaagagcgtcgccg 47  Q
    ||||||| ||||||||||||||||| || ||||||||||||||||||    
T  19332865 tgatgtcctagatgaatttgcaagcaaaagttagaagagcgtcgccg 19332819  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 40273074 - 40273112
Alignment:
Q  1 tgatgtcttagatgaatttgcaagcgaaggttagaagag 39  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  40273074 tgatgtcttagatgaatttgcaagcgaagtttagaagag 40273112  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 32318837 - 32318882
Alignment:
Q  1 tgatgtcttagatgaatttgcaagcgaaggttagaagagcgtcgcc 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  32318837 tgatgtcttagatgaatttgcaagcgaaggttagaagagcgtcgcc 32318882  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 3118376 - 3118333
Alignment:
Q  1 tgatgtcttagatgaatttgcaagcgaaggttagaagagcgtcg 44  Q
    |||| ||||||||||||||||||| |||||||||||||||||||    
T  3118376 tgatctcttagatgaatttgcaagtgaaggttagaagagcgtcg 3118333  T

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Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 3914313 - 3914360
Alignment:
Q  1 tgatgtcttagatgaatttgcaagcgaaggttagaagagcgtcgccga 48  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3914313 tgatgtcttagatgaatttgcaagcgaagattagaagagcgtcgccga 3914360  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 32244078 - 32244033
Alignment:
Q  1 tgatgtcttagatgaatttgcaagcgaaggttagaagagcgtcgcc 46  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  32244078 tgatgtcttagatgaatttgcaagcgaagtttagaagagcgtcgcc 32244033  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 3866091 - 3866048
Alignment:
Q  1 tgatgtcttagatgaatttgcaagcgaaggttagaagagcgtcg 44  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  3866091 tgatgtcttagatgaatttgcaagcgaagtttagaagagcgtcg 3866048  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 6244069 - 6244116
Alignment:
Q  1 tgatgtcttagatgaatttgcaagcgaaggttagaagagcgtcgccga 48  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||    
T  6244069 tgatgtcttagatgaatttgcaggcgaaggttagaagagtgtcgccga 6244116  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 44894303 - 44894348
Alignment:
Q  1 tgatgtcttagatgaatttgcaagcgaaggttagaagagcgtcgcc 46  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||    
T  44894303 tgatgtcttggatgaatttgcaagcaaaggttagaagagcgtcgcc 44894348  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 33476083 - 33476128
Alignment:
Q  1 tgatgtcttagatgaatttgcaagcgaaggttagaagagcgtcgcc 46  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  33476083 tgatgtcttagatgaatttgcaagcgaagtttagaagagcgtcgcc 33476128  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 44556530 - 44556575
Alignment:
Q  1 tgatgtcttagatgaatttgcaagcgaaggttagaagagcgtcgcc 46  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  44556530 tgatgtcttagatgaatttgcaagcgaagtttagaagagcgtcgcc 44556575  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 31991471 - 31991424
Alignment:
Q  1 tgatgtcttagatgaatttgcaagcgaaggttagaagagcgtcgccga 48  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||    
T  31991471 tgatgtcttagatgaatttgcaagcgaaggttagaaaagtgtcgccga 31991424  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 41927663 - 41927620
Alignment:
Q  1 tgatgtcttagatgaatttgcaagcgaaggttagaagagcgtcg 44  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  41927663 tgatgtcttagatgaatttgcaagtgaaggttagaagagcgtcg 41927620  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 8575791 - 8575835
Alignment:
Q  1 tgatgtcttagatgaatttgcaagcgaaggttagaagagcgtcgc 45  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||    
T  8575791 tgatgtcttagatgaatttgcaagtgaaggttagaagatcgtcgc 8575835  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 52701564 - 52701519
Alignment:
Q  2 gatgtcttagatgaatttgcaagcgaaggttagaagagcgtcgccg 47  Q
    |||||| |||||||||||| |||| |||||||||||||||||||||    
T  52701564 gatgtcctagatgaatttgaaagcaaaggttagaagagcgtcgccg 52701519  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 37108079 - 37108036
Alignment:
Q  1 tgatgtcttagatgaatttgcaagcgaaggttagaagagcgtcg 44  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  37108079 tgatgtcttagatgaatttgcaagcgaagtttagaagagcgtcg 37108036  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 8082210 - 8082164
Alignment:
Q  1 tgatgtcttagatgaatttgcaagcgaaggttagaagagcgtcgccg 47  Q
    ||||||||| ||||||||||||||| ||||||| |||||||||||||    
T  8082210 tgatgtcttggatgaatttgcaagcaaaggttacaagagcgtcgccg 8082164  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 8833114 - 8833068
Alignment:
Q  1 tgatgtcttagatgaatttgcaagcgaaggttagaagagcgtcgccg 47  Q
    ||||||||| ||||||||||||||| ||||||||||||| |||||||    
T  8833114 tgatgtcttggatgaatttgcaagcaaaggttagaagagtgtcgccg 8833068  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 38594903 - 38594857
Alignment:
Q  1 tgatgtcttagatgaatttgcaagcgaaggttagaagagcgtcgccg 47  Q
    ||||||| ||||||||||||||||| ||||||||||||| |||||||    
T  38594903 tgatgtcctagatgaatttgcaagcaaaggttagaagagtgtcgccg 38594857  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 1066082 - 1066037
Alignment:
Q  1 tgatgtcttagatgaatttgcaagcgaaggttagaagagcgtcgcc 46  Q
    ||||||||||||||||||||||||||||| ||| |||||| |||||    
T  1066082 tgatgtcttagatgaatttgcaagcgaagtttataagagcatcgcc 1066037  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 42973998 - 42974037
Alignment:
Q  1 tgatgtcttagatgaatttgcaagcgaaggttagaagagc 40  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  42973998 tgatgtcttggatgaatttgcaagcaaaggttagaagagc 42974037  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 44452486 - 44452444
Alignment:
Q  1 tgatgtcttagatgaatttgcaagcgaaggttagaagagcgtc 43  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  44452486 tgatgtcttagatgaatttgcaagcgaagtttagaagagcgtc 44452444  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 34512922 - 34512967
Alignment:
Q  1 tgatgtcttagatgaatttgcaagcgaaggttagaagagcgtcgcc 46  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||    
T  34512922 tgatgtcttggatgaatttgcaagcaaaggttagaagagcgtcgcc 34512967  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 28163616 - 28163662
Alignment:
Q  1 tgatgtcttagatgaatttgcaagcgaaggttagaagagcgtcgccg 47  Q
    ||||||||||||||||||| ||||| ||||||||||||| |||||||    
T  28163616 tgatgtcttagatgaatttacaagcaaaggttagaagagtgtcgccg 28163662  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 25352358 - 25352312
Alignment:
Q  1 tgatgtcttagatgaatttgcaagcgaaggttagaagagcgtcgccg 47  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||    
T  25352358 tgatgtcttagatgaatttgcaagcaaaggttagaagagcgccgccg 25352312  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 52010264 - 52010221
Alignment:
Q  4 tgtcttagatgaatttgcaagcgaaggttagaagagcgtcgccg 47  Q
    |||||||||||||||||||||| |||||||||||||||| ||||    
T  52010264 tgtcttagatgaatttgcaagcaaaggttagaagagcgttgccg 52010221  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 52881992 - 52881953
Alignment:
Q  1 tgatgtcttagatgaatttgcaagcgaaggttagaagagc 40  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  52881992 tgatgtcttagatgaatttgcaggcgaaggttagaagagc 52881953  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 12897006 - 12897052
Alignment:
Q  1 tgatgtcttagatgaatttgcaagcgaaggttagaagagcgtcgccg 47  Q
    ||||||||||||| ||||||||||||||||||| |||| ||||||||    
T  12897006 tgatgtcttagataaatttgcaagcgaaggttaaaagaacgtcgccg 12897052  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 11397436 - 11397390
Alignment:
Q  1 tgatgtcttagatgaatttgcaagcgaaggttagaagagcgtcgccg 47  Q
    ||||||| ||||||||||||||||| || |||||||||| |||||||    
T  11397436 tgatgtcctagatgaatttgcaagcaaatgttagaagagtgtcgccg 11397390  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 27551404 - 27551449
Alignment:
Q  1 tgatgtcttagatgaatttgcaagcgaaggttagaagagcgtcgcc 46  Q
    |||||||||||||||||||| |||||||  ||||||||| ||||||    
T  27551404 tgatgtcttagatgaatttggaagcgaaatttagaagagtgtcgcc 27551449  T

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