View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_337 (Length: 218)
Name: NF11385A_low_337
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_337 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 21378360 - 21378532
Alignment:
| Q |
20 |
ctatattcactccaagctatcttcagttaacctacctgctatttatggtaaccttattggaacagggaactattttgttgttgtagggcttggtactcct |
119 |
Q |
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| T |
21378360 |
ctatattcactccaagctatcttcagataacctacctgctatttatggtaaccttattggaacagggaactattttgttgttgtagggcttggtactcct |
21378459 |
T |
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| Q |
120 |
aaaaggaacttgtctcttgtttttgatactggtagtgatctcacttggactcagtgtcaaccttgtgatcgtc |
192 |
Q |
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| T |
21378460 |
aaaaggaacttgtctcttgtttttgatactggtagtgatctcacttggactcagtgtcaaccttgtgctcgtc |
21378532 |
T |
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Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 42 - 186
Target Start/End: Original strand, 21404851 - 21404995
Alignment:
| Q |
42 |
tcagttaacctacctgctatttatggtaaccttattggaacagggaactattttgttgttgtagggcttggtactcctaaaaggaacttgtctcttgttt |
141 |
Q |
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| T |
21404851 |
tcagctaacctaccagctaaatctggtagccttattggatcagggaattattttgttgttttagggcttggaactcctaaaaaggatttgtcacttattt |
21404950 |
T |
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| Q |
142 |
ttgatactggtagtgatctcacttggactcagtgtcaaccttgtg |
186 |
Q |
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| T |
21404951 |
ttgacactggtagtgatctcacttggactcaatgtcaaccttgtg |
21404995 |
T |
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