View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11385A_low_340 (Length: 216)
Name: NF11385A_low_340
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_340 |
 | |
|
| [»] scaffold0559 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 131; Significance: 4e-68; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 55 - 197
Target Start/End: Original strand, 40826959 - 40827101
Alignment:
| Q |
55 |
tgaaataacataataaaacggcaaaactgctacaaatttgataaaatcaagctaatattgatacacaagacattaattgatatgtcaatttgaaccaaac |
154 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40826959 |
tgaattaacataataaaacggcaaaactgctacaaatttgataaaatcaagctactattgatacacaagacattaattgatatgtcaatttgaaccaaac |
40827058 |
T |
|
| Q |
155 |
aaacaccccaataagatggataatcaaacaacattgcaccatg |
197 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40827059 |
aaataccccaataagatggataatcaaacaacattgcaccatg |
40827101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 40826904 - 40826945
Alignment:
| Q |
18 |
aatatggaaaacaacaccaatttaatatcgttgaaattgaaa |
59 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40826904 |
aatatggaaaacaacaccaatttaatatcgttgaaattgaaa |
40826945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 185
Target Start/End: Complemental strand, 41220987 - 41220936
Alignment:
| Q |
134 |
atatgtcaatttgaaccaaacaaacaccccaataagatggataatcaaacaa |
185 |
Q |
| |
|
|||||||||| | ||||||||||||||| |||||||| ||| |||||||||| |
|
|
| T |
41220987 |
atatgtcaatctaaaccaaacaaacaccacaataagacggaaaatcaaacaa |
41220936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 69 - 197
Target Start/End: Original strand, 4546 - 4674
Alignment:
| Q |
69 |
aaaacggcaaaactgctacaaatttgataaaatcaagctaatattgatacacaagacattaattgatatgtcaatttgaaccaaacaaacaccccaataa |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4546 |
aaaacggcaaaactgctacaaatttgataaaatcaagctactattgatacacaagacattaattgatatgtcaatttgaaccaaacaaataccccaataa |
4645 |
T |
|
| Q |
169 |
gatggataatcaaacaacattgcaccatg |
197 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
4646 |
gatggataatcaaacaacattgcaccatg |
4674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 4474 - 4515
Alignment:
| Q |
18 |
aatatggaaaacaacaccaatttaatatcgttgaaattgaaa |
59 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4474 |
aatatggaaaacaacaccaatttaatatcgttgaaattgaaa |
4515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University