View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_344 (Length: 211)
Name: NF11385A_low_344
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_344 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 34 - 191
Target Start/End: Complemental strand, 7627529 - 7627372
Alignment:
| Q |
34 |
agaagaatccaatgacgttaccactttttccattaatgaactgcaaagcaattttcttgtccaagaagcaagaatgacacttcacaagaaaaaggaagaa |
133 |
Q |
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| T |
7627529 |
agaagaatccaatgaccttaccactttttccattaatgaactgcaaagcaattttcttgttcaagaagcaagaatgacacttcacaagaaaaaggaagaa |
7627430 |
T |
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| Q |
134 |
gaacaactcttgaaggtgtcaaattcaagaagaggaagaactgaagatggtggtttta |
191 |
Q |
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| T |
7627429 |
gaacaactcttgaaggtgtcaaattcaagaagaggaagaactggagatggtggtttta |
7627372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 34 - 191
Target Start/End: Original strand, 8921242 - 8921399
Alignment:
| Q |
34 |
agaagaatccaatgacgttaccactttttccattaatgaactgcaaagcaattttcttgtccaagaagcaagaatgacacttcacaagaaaaaggaagaa |
133 |
Q |
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| T |
8921242 |
agaagaatccaatgatgttaccgctttttccattaatgaactgcaaagcaattttcttgttcaagaagcatgaatgacacttcacaagaaaaaggaagaa |
8921341 |
T |
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| Q |
134 |
gaacaactcttgaaggtgtcaaattcaagaagaggaagaactgaagatggtggtttta |
191 |
Q |
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| T |
8921342 |
gaacaactcttgaaggtgtcaaattcaagaagaggaagagctggagatggtggtttta |
8921399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 110
Target Start/End: Complemental strand, 35372168 - 35372092
Alignment:
| Q |
34 |
agaagaatccaatgacgttaccactttttccattaatgaactgcaaagcaattttcttgtccaagaagcaagaatga |
110 |
Q |
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| T |
35372168 |
agaagaatctaatgatgttaccactctttctattgatgaactgcaatgcagattacttgtgcaagaagcaagaatga |
35372092 |
T |
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