View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_348 (Length: 210)
Name: NF11385A_low_348
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_348 |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 14 - 189
Target Start/End: Original strand, 4775705 - 4775877
Alignment:
| Q |
14 |
cgaacaatatgataatctatggcaatatgcttcatcctagagtactgaaagacagggtttgcacatagagatgtagctccaatgttttctaagaatattg |
113 |
Q |
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| T |
4775705 |
cgaacaaaatgataatctatggcaatatgcttcatcctagagt---gaaagacagggtttgcacatagatatgtagctccaatgttgtcttagaatattg |
4775801 |
T |
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| Q |
114 |
ttggtgccgttaatggaatttgaagttcttgtaacaagttttgaacccatattaattcttgagtagtggctgctat |
189 |
Q |
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| T |
4775802 |
ttggtgcagttaatggaatttgaagttcttgtaacaagttttgaacccatattaattcttgagtagtggctgctat |
4775877 |
T |
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Target: chr5 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 43061068 - 43061238
Alignment:
| Q |
16 |
aacaatatgataatctatggcaatatgcttcatcctagagtactgaaagacagggtttgcacatagagatgtagctccaatgttttctaagaatattgtt |
115 |
Q |
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| T |
43061068 |
aacaaaatgataatctatggcaatgtgtttcatcctatagt---gaaaaacagggtttgcacatagatatgtagctctaatgttgtctgagaatatcgtt |
43061164 |
T |
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| Q |
116 |
ggtgccgttaatggaatttgaagttcttgtaacaagttttgaacccatattaattcttgagtagtggctgctat |
189 |
Q |
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| T |
43061165 |
ggtgcagttaatggaatttgaagttcttgtaacaagttttgaacccatattaattcctgagtagtggctgctat |
43061238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 45192914 - 45192874
Alignment:
| Q |
59 |
tgaaagacagggtttgcacatagagatgtagctccaatgtt |
99 |
Q |
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| T |
45192914 |
tgaaggacagggtttgcacatagatatgtagctccaatgtt |
45192874 |
T |
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