View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11385A_low_35 (Length: 401)

Name: NF11385A_low_35
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11385A_low_35
NF11385A_low_35
[»] chr3 (2 HSPs)
chr3 (12-237)||(49123946-49124171)
chr3 (230-395)||(49124225-49124390)
[»] chr4 (1 HSPs)
chr4 (71-178)||(4271421-4271528)
[»] chr1 (1 HSPs)
chr1 (71-178)||(2807765-2807872)
[»] chr6 (2 HSPs)
chr6 (331-379)||(11683218-11683266)
chr6 (331-390)||(18988416-18988475)
[»] chr8 (1 HSPs)
chr8 (331-390)||(30341290-30341349)
[»] chr5 (1 HSPs)
chr5 (331-390)||(23917049-23917108)


Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 49123946 - 49124171
Alignment:
Q  12 aagaaactttggtgaataaaatactttgtggaagaagataaaatatatagtaaattcagttttttaccttggcattgaagtttgcatctaaaagaatatt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49123946 aagaaactttggtgaataaaatactttgtggaagaagataaaatatatagtaaattcagttttttaccttggcattgaagtttgcatctaaaagaatatt 49124045  T
Q  112 tgaagatttcatatctctatgaatcactcgagggtaacaatgctcatgtagatattctaatcctctggtcatcaaagaagaatgtaaatatgttaagtgt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49124046 tgaagatttcatatctctatgaatcactcgagggtaacaatgctcatgtagatattctaatcctctggtcatcaaagaagaatgtaaatatgttaagtgt 49124145  T
Q  212 gttaacatagattttaatattcataa 237  Q
    ||||||||||||||||||||||||||    
T  49124146 gttaacatagattttaatattcataa 49124171  T

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Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 230 - 395
Target Start/End: Original strand, 49124225 - 49124390
Alignment:
Q  230 attcataataaactttgttaaggggacaaaacttttaagatgcagaatgaaaacgatctataacttctccaatcggaattgttcattaatttgttaacag 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49124225 attcataataaactttgttaaggggacaaaacttttaagatgcagaatgaaaacgatctataacttctccaatcggaattgttcattaatttgttaacag 49124324  T
Q  330 ttgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccataactacattccaag 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  49124325 ttgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccttaactacattccaag 49124390  T

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Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 71 - 178
Target Start/End: Complemental strand, 4271528 - 4271421
Alignment:
Q  71 ttttttaccttggcattgaagtttgcatctaaaagaatatttgaagatttcatatctctatgaatcactcgagggtaacaatgctcatgtagatattcta 170  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||  |||||| || |||||||| ||||||| ||    
T  4271528 ttttttaccttggcattgaagtttgcatctaaaagaatattagaagatttcagatctctatggatcactgcagggtagcagtgctcatgcagatatttta 4271429  T
Q  171 atcctctg 178  Q
    | ||||||    
T  4271428 aacctctg 4271421  T

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Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 71 - 178
Target Start/End: Complemental strand, 2807872 - 2807765
Alignment:
Q  71 ttttttaccttggcattgaagtttgcatctaaaagaatatttgaagatttcatatctctatgaatcactcgagggtaacaatgctcatgtagatattcta 170  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||  |||||| || |||||||| ||||||| ||    
T  2807872 ttttttaccttggcattgaagtttgcatctaaaagaatattagaagatttcagatctctatggatcactgcagggtagcagtgctcatgcagatatttta 2807773  T
Q  171 atcctctg 178  Q
    | ||||||    
T  2807772 aacctctg 2807765  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 11683218 - 11683266
Alignment:
Q  331 tgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagcc 379  Q
    ||||||||||||||||||||||| |||||| ||||||||||||| ||||    
T  11683218 tgtaattttgaattttgtatactaggttaaagttgtgattgaaatagcc 11683266  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 390
Target Start/End: Original strand, 18988416 - 18988475
Alignment:
Q  331 tgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccataactacatt 390  Q
    |||||||||||| |||| | |||||||||| ||||| ||||||| |||| ||||||||||    
T  18988416 tgtaattttgaactttgcaaacttggttaaagttgtaattgaaatagccttaactacatt 18988475  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 331 - 390
Target Start/End: Complemental strand, 30341349 - 30341290
Alignment:
Q  331 tgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccataactacatt 390  Q
    |||||||||||| |||||| |||||||||| ||||| ||||||| |||| ||||||||||    
T  30341349 tgtaattttgaactttgtaaacttggttaaagttgtaattgaaatagccttaactacatt 30341290  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 390
Target Start/End: Complemental strand, 23917108 - 23917049
Alignment:
Q  331 tgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccataactacatt 390  Q
    |||||||||||| |||| | |||||||||| ||||| ||||||| |||| ||||||||||    
T  23917108 tgtaattttgaactttgcaaacttggttaaagttgtaattgaaatagccttaactacatt 23917049  T

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