View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_351 (Length: 208)
Name: NF11385A_low_351
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_351 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 5795834 - 5796035
Alignment:
| Q |
1 |
accaatatttcctgcactttgatgacctttttctaacctgtgatgtattaacatctaactcatgagctatgagtccagctaactttgtaatgtaaggctg |
100 |
Q |
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| T |
5795834 |
accaatatttcctgcactttgatgaccattttctaacctgtgatgtattaacatctaactcatgagctatgaatccagctaactttgtaatgtaaggctg |
5795933 |
T |
|
| Q |
101 |
catatccgtgtagctcgtgttaaatgaaatggctattgttatttgagcaatttgaagttcacctgcacgttcaatcataggagattagtcgttactcatt |
200 |
Q |
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| T |
5795934 |
catatccgtgtagctcgtgttaaatgaaatggctattgttatttgagcaatttggagttcacctgcacattcaatcataggagattagtcgttactcatt |
5796033 |
T |
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| Q |
201 |
ag |
202 |
Q |
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|| |
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| T |
5796034 |
ag |
5796035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 29 - 165
Target Start/End: Complemental strand, 39690061 - 39689925
Alignment:
| Q |
29 |
ttttctaacctgtgatgtattaacatctaactcatgagctatgagtccagctaactttgtaatgtaaggctgcatatccgtgtagctcgtgttaaatgaa |
128 |
Q |
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|||||||||||| || |||||||||| |||||| ||||||||||||||||| || | ||||| | ||||| |||||| |||||| | ||||||||| |
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| T |
39690061 |
ttttctaacctgggaagtattaacatttaactcgtgagctatgagtccagccaattctgtaaggcgaggcttcatatcatcgtagctgatattaaatgaa |
39689962 |
T |
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| Q |
129 |
atggctattgttatttgagcaatttgaagttcacctg |
165 |
Q |
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| T |
39689961 |
actgctattgttatttgtgcgatttggaattcacctg |
39689925 |
T |
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