View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_352 (Length: 207)
Name: NF11385A_low_352
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_352 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 3e-99; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 5 - 207
Target Start/End: Complemental strand, 8947195 - 8946993
Alignment:
| Q |
5 |
cactcaccacaattccttggcctcaatccatttgaaggggcacggccagcttctaagtttggtcaagatgtcattattggtttgattgactcaggtgttt |
104 |
Q |
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| T |
8947195 |
cactcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggtttgattgactcaggtgttt |
8947096 |
T |
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| Q |
105 |
ggcccgaaagtgaaagtcttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgcaaataccaacaattcatcatt |
204 |
Q |
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| T |
8947095 |
ggcccgagagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgaaaatagcaacaattcatcatt |
8946996 |
T |
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| Q |
205 |
ttg |
207 |
Q |
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||| |
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| T |
8946995 |
ttg |
8946993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 207
Target Start/End: Original strand, 8973299 - 8973502
Alignment:
| Q |
4 |
tcactcaccacaattccttggcctcaatccatttgaaggggcacggccagcttctaagtttggtcaagatgtcattattggtttgattgactcaggtgtt |
103 |
Q |
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|||||||||||||||||||||||| ||| ||| |||||||| ||||||||||| | | ||| ||||||||||| ||||| ||||||| | |||||| |
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| T |
8973299 |
tcactcaccacaattccttggccttaattcatacaaaggggcatggccagcttctgattatggcaaagatgtcattgttggtatgattgataccggtgtt |
8973398 |
T |
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| Q |
104 |
tggcccgaaagtgaaagtcttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgcaaataccaacaattcatcat |
203 |
Q |
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| T |
8973399 |
tggccagaaagtgaaagtttcaaagataatgacatgcctcaaattccttcaaaatggaaagggcaattatgtcaatttgaaaataccaacaattcatctt |
8973498 |
T |
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| Q |
204 |
tttg |
207 |
Q |
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|||| |
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| T |
8973499 |
tttg |
8973502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 69 - 207
Target Start/End: Original strand, 8961962 - 8962100
Alignment:
| Q |
69 |
aagatgtcattattggtttgattgactcaggtgtttggcccgaaagtgaaagtcttaatgataatggaatgactaaaatcccttcaaaatggaaagggaa |
168 |
Q |
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| T |
8961962 |
aagatgtcattgttggtgtgattgataccggtgtttggccagaaagtgaaagtttcaatgataatggatttactaaaattccttcaaaatggaaagggaa |
8962061 |
T |
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| Q |
169 |
gttatgtcaatttgcaaataccaacaattcatcattttg |
207 |
Q |
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| T |
8962062 |
attatgtcaatttgaaaataccaacaattcatctttttg |
8962100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 5 - 182
Target Start/End: Complemental strand, 21688346 - 21688169
Alignment:
| Q |
5 |
cactcaccacaattccttggcctcaatccatttgaaggggcacggccagcttctaagtttggtcaagatgtcattattggtttgattgactcaggtgttt |
104 |
Q |
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|||||||| ||||| |||||||| ||||||| | ||||||| ||||| ||||| | |||||| ||||| ||||| ||||| | || ||| | ||||||| |
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| T |
21688346 |
cactcacctcaatttcttggccttaatccatatagaggggcatggccaacttctgattttggtaaagatatcattgttggtgtaatagacactggtgttt |
21688247 |
T |
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| Q |
105 |
ggcccgaaagtgaaagtcttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttg |
182 |
Q |
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|||| |||||||||||| ||| ||| |||||||||||||||| || |||||||||||||| | ||||||||||||| |
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| T |
21688246 |
ggccagaaagtgaaagttttagagatgatggaatgactaaaataccctcaaaatggaaaggccaattatgtcaatttg |
21688169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 165
Target Start/End: Complemental strand, 34963857 - 34963779
Alignment:
| Q |
87 |
tgattgactcaggtgtttggcccgaaagtgaaagtcttaatgataatggaatgactaaaatcccttcaaaatggaaagg |
165 |
Q |
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| T |
34963857 |
tgattgacacaggagtttggccagaaagtgagagcttcaaagatgatggaatgactaaaattccttcaaaatggaaagg |
34963779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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