View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11385A_low_353 (Length: 207)

Name: NF11385A_low_353
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11385A_low_353
NF11385A_low_353
[»] chr1 (1 HSPs)
chr1 (1-132)||(47192589-47192719)
[»] scaffold0393 (1 HSPs)
scaffold0393 (1-69)||(10764-10834)
[»] chr5 (1 HSPs)
chr5 (1-69)||(3175083-3175153)
[»] chr4 (2 HSPs)
chr4 (1-69)||(45144858-45144928)
chr4 (1-69)||(23217429-23217499)
[»] chr8 (5 HSPs)
chr8 (1-69)||(16659739-16659809)
chr8 (1-69)||(22015753-22015823)
chr8 (1-69)||(1668945-1669015)
chr8 (1-69)||(38520435-38520505)
chr8 (16-61)||(27185452-27185497)
[»] chr2 (2 HSPs)
chr2 (1-65)||(3934503-3934569)
chr2 (1-69)||(38974881-38974951)
[»] chr3 (3 HSPs)
chr3 (1-69)||(2338025-2338095)
chr3 (6-71)||(12707358-12707423)
chr3 (20-60)||(52894098-52894138)


Alignment Details
Target: chr1 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 47192719 - 47192589
Alignment:
Q  1 tcaaacaataagaccgaagtatactagcatagagcaagcatacccctgtctcactcccgaactagccaaaaacacagccagactgcaaacactcaagtgc 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  47192719 tcaaacaataaggccgaagtatactagcatagagcaagcatacccctgtctcactcctgaactagccaaaaacacagccagactgcaaacacccaagtgc 47192620  T
Q  101 agcgcaccaacaccacaagggccaaactaaag 132  Q
    ||||||||||||||| ||||||||||||||||    
T  47192619 agcgcaccaacacca-aagggccaaactaaag 47192589  T

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Target: scaffold0393 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 10764 - 10834
Alignment:
Q  1 tcaaacaataagaccgaagtata--ctagcatagagcaagcatacccctgtctcactcccgaactagccaa 69  Q
    ||||||||| || ||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||    
T  10764 tcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctgcctcactcccgaactagccaa 10834  T

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Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 3175153 - 3175083
Alignment:
Q  1 tcaaacaataagaccgaagtata--ctagcatagagcaagcatacccctgtctcactcccgaactagccaa 69  Q
    ||||||||| || ||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||    
T  3175153 tcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctgcctcactcccgaactagccaa 3175083  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 45144928 - 45144858
Alignment:
Q  1 tcaaacaataagaccgaagtata--ctagcatagagcaagcatacccctgtctcactcccgaactagccaa 69  Q
    ||||||||| || ||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||    
T  45144928 tcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctgcctcactcccgaactagccaa 45144858  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 23217429 - 23217499
Alignment:
Q  1 tcaaacaataagaccgaagtata--ctagcatagagcaagcatacccctgtctcactcccgaactagccaa 69  Q
    ||||||||| || ||||||||||  ||||||||||||||||||||||||  |||||||| |||||||||||    
T  23217429 tcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctacctcactcctgaactagccaa 23217499  T

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Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 16659809 - 16659739
Alignment:
Q  1 tcaaacaataagaccgaagtata--ctagcatagagcaagcatacccctgtctcactcccgaactagccaa 69  Q
    ||||||||| || ||||||||||  |||||||||||||||||||||||||  |||||||||||||||||||    
T  16659809 tcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctgcatcactcccgaactagccaa 16659739  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 22015823 - 22015753
Alignment:
Q  1 tcaaacaataagaccgaagtata--ctagcatagagcaagcatacccctgtctcactcccgaactagccaa 69  Q
    ||||||||| || ||||||||||  ||||||||||||||||||||||||| |||||||| |||||||||||    
T  22015823 tcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctgcctcactcctgaactagccaa 22015753  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 1669015 - 1668945
Alignment:
Q  1 tcaaacaataagaccgaagtata--ctagcatagagcaagcatacccctgtctcactcccgaactagccaa 69  Q
    ||||||||| || ||||||||||  ||||||||||||||||||||||||  |||||||| |||||||||||    
T  1669015 tcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctacctcactcctgaactagccaa 1668945  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 38520435 - 38520505
Alignment:
Q  1 tcaaacaataagaccgaagtata--ctagcatagagcaagcatacccctgtctcactcccgaactagccaa 69  Q
    ||||||||| || ||||||||||  ||||||||||||||||||||||||  |||||||| |||||||||||    
T  38520435 tcaaacaatgaggccgaagtatatactagcatagagcaagcataccccttcctcactcctgaactagccaa 38520505  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 27185452 - 27185497
Alignment:
Q  16 gaagtatactagcatagagcaagcatacccctgtctcactcccgaa 61  Q
    |||||||||| |||| | ||||||||||||||| ||||||||||||    
T  27185452 gaagtatacttgcatggggcaagcatacccctgcctcactcccgaa 27185497  T

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Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 3934503 - 3934569
Alignment:
Q  1 tcaaacaataagaccgaagtata--ctagcatagagcaagcatacccctgtctcactcccgaactag 65  Q
    ||||||||| || ||||||||||  ||||||||||||||||||||||||| ||||||||||||||||    
T  3934503 tcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctgcctcactcccgaactag 3934569  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 38974881 - 38974951
Alignment:
Q  1 tcaaacaataagaccgaagtata--ctagcatagagcaagcatacccctgtctcactcccgaactagccaa 69  Q
    ||||||||| || ||||||||||  ||||||||||| ||||||||||||| ||||||||||||||||||||    
T  38974881 tcaaacaatgaggccgaagtatatactagcatagagtaagcatacccctgcctcactcccgaactagccaa 38974951  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 2338025 - 2338095
Alignment:
Q  1 tcaaacaataagaccgaagtata--ctagcatagagcaagcatacccctgtctcactcccgaactagccaa 69  Q
    ||||||||| || ||||||||||  ||||||||||||||||||||||||  |||||||| |||||||||||    
T  2338025 tcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctacctcactcctgaactagccaa 2338095  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 12707423 - 12707358
Alignment:
Q  6 caataagaccgaagtatactagcatagagcaagcatacccctgtctcactcccgaactagccaaaa 71  Q
    ||||||| ||||||||||||||||| |||||||||||| ||||  ||||| || ||| ||||||||    
T  12707423 caataaggccgaagtatactagcatggagcaagcatactcctgcatcacttccaaacaagccaaaa 12707358  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 52894138 - 52894098
Alignment:
Q  20 tatactagcatagagcaagcatacccctgtctcactcccga 60  Q
    |||||||||| |||||||||||||||||| |||||||||||    
T  52894138 tatactagcacagagcaagcatacccctgcctcactcccga 52894098  T

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