View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11385A_low_356 (Length: 206)

Name: NF11385A_low_356

Description: NF11385A

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF11385A_low_356

[»] chr3 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 163; E-Value: 3e-87

Query Start/End: Original strand, 21 - 187

Target Start/End: Original strand, 34431523 - 34431689

Alignment:

Q	21	attataatgttatcgtgattctgtcaaattcaccattcggatgagatatatgatatgatacatacttttcattcaaccttccaagcatatagaaacaagc	120	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34431523	attataatgttatcgtgattttgtcaaattcaccattcggatgagatatatgatatgatacatacttttcattcaaccttccaagcatatagaaacaagc	34431622	T

Q	121	aatactctgatgaggatgataatgaatcactgacactacggccctccactgaatcacaagtactact	187	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34431623	aatactctgatgaggatgataatgaatcactgacactacggccctccactgaatcacaagtactact	34431689	T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 40; E-Value: 0.00000000000007

Query Start/End: Original strand, 86 - 133

Target Start/End: Original strand, 43402602 - 43402649

Alignment:

Q	86	ttttcattcaaccttccaagcatatagaaacaagcaatactctgatga	133	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	43402602	ttttcattcaaccttccaagcataaagaaacaagcaaaactctgatga	43402649	T

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