View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_36 (Length: 396)
Name: NF11385A_low_36
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 6 - 389
Target Start/End: Original strand, 13879509 - 13879887
Alignment:
| Q |
6 |
actgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaacacagacatcaatctcttccttcctcacgttatcagcgacaa |
105 |
Q |
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| T |
13879509 |
actgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaacacagacatcaatctcttccttcctcacgttgtcagcgacaa |
13879608 |
T |
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| Q |
106 |
gattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaagatcatcatcatcnnnnnnnnnnnnnnnnnnnnnnnncagctcatt |
205 |
Q |
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| T |
13879609 |
gattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaag---atcatcatcatcatcgttgttgttgttgttgttcagctcatt |
13879705 |
T |
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| Q |
206 |
ggtgttgaaatagtgaatgagtcgaggagcagcgtaggagatggcaaccagagacatggcggcagtagcgaaggggcggtggcgaatgaatgcaggcacg |
305 |
Q |
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| T |
13879706 |
ggtgttgaaatagcgaatgagtcgtggagtggcgtaggagatggcaaccagagacatggcggcagtagcgaaggggcggtggcgaatgaatgcaggcacg |
13879805 |
T |
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| Q |
306 |
gcggacatgaaagagtggtaagaggaagaaaggaggcgggaaaatgccattgtgttgacagttgacagagtgagattttcttgg |
389 |
Q |
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| T |
13879806 |
gcggacatgaaagagtggtaagaggaagaaaggaggcgggaaaatgccattgtgttaacagttgac--agtgagattttcttgg |
13879887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 7 - 162
Target Start/End: Original strand, 13875293 - 13875448
Alignment:
| Q |
7 |
ctgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaacacagacatcaatctcttccttcctcacgttatcagcgacaag |
106 |
Q |
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| T |
13875293 |
ctgaaaatcgatttcgacctggaagagcatccttaatcctgagagtaccgtgatcaacacagacatcaatctcttccttcctcacgttgttggcgaccag |
13875392 |
T |
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| Q |
107 |
attcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaagat |
162 |
Q |
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| T |
13875393 |
attcaaccgaaaaatcaaagactcctcggtctcctcaaaatcacagagaacaagat |
13875448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 200 - 363
Target Start/End: Original strand, 13875477 - 13875640
Alignment:
| Q |
200 |
ctcattggtgttgaaatagtgaatgagtcgaggagcagcgtaggagatggcaaccagagacatggcggcagtagcgaaggggcggtggcgaatgaatgca |
299 |
Q |
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| T |
13875477 |
ctcattggtgttgaaatagcgaatgagtggaggtgcggtgtaggagatggctacgagtgacatggcggcagtagcgacggggtggcggcgaatgagtgaa |
13875576 |
T |
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| Q |
300 |
ggcacggcggacatgaaagagtggtaagaggaagaaaggaggcgggaaaatgccattgtgttga |
363 |
Q |
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| T |
13875577 |
ggcacggcggccatgaatgagcggtagcaggaagagaggaggcgggaaaatgccattgtgttga |
13875640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 363
Target Start/End: Original strand, 13885720 - 13885756
Alignment:
| Q |
327 |
gaggaagaaaggaggcgggaaaatgccattgtgttga |
363 |
Q |
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| T |
13885720 |
gaggaagagaggaagcgggaaaatgccattgtgttga |
13885756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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