View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11385A_low_360 (Length: 204)

Name: NF11385A_low_360
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11385A_low_360
NF11385A_low_360
[»] chr2 (19 HSPs)
chr2 (20-189)||(44624829-44624998)
chr2 (40-189)||(44615456-44615605)
chr2 (29-189)||(39153106-39153266)
chr2 (53-189)||(39138693-39138826)
chr2 (29-186)||(39387469-39387626)
chr2 (53-186)||(39472763-39472896)
chr2 (29-189)||(39216704-39216864)
chr2 (29-189)||(39396627-39396787)
chr2 (56-189)||(39371164-39371297)
chr2 (54-189)||(39205742-39205877)
chr2 (29-186)||(39196485-39196642)
chr2 (56-189)||(39380496-39380629)
chr2 (29-186)||(39413004-39413161)
chr2 (61-189)||(44895114-44895242)
chr2 (54-180)||(39478294-39478420)
chr2 (29-188)||(39421161-39421317)
chr2 (54-189)||(39223758-39223893)
chr2 (38-157)||(39188738-39188857)
chr2 (42-189)||(39604363-39604510)
[»] chr8 (3 HSPs)
chr8 (53-189)||(44730162-44730298)
chr8 (31-189)||(45343012-45343170)
chr8 (28-189)||(44949869-44950030)
[»] chr5 (2 HSPs)
chr5 (28-184)||(17060698-17060854)
chr5 (29-186)||(33562339-33562496)
[»] scaffold0283 (1 HSPs)
scaffold0283 (28-189)||(5849-6010)
[»] chr7 (1 HSPs)
chr7 (53-189)||(19808950-19809083)
[»] chr6 (1 HSPs)
chr6 (126-189)||(16114414-16114477)


Alignment Details
Target: chr2 (Bit Score: 154; Significance: 7e-82; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 44624998 - 44624829
Alignment:
Q  20 cttgtatccagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacc 119  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44624998 cttgtatccagcaacagatccaaaaagcttttagacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacc 44624899  T
Q  120 tccaaagaattttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcttctc 189  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44624898 tccaaataattttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctc 44624829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 40 - 189
Target Start/End: Complemental strand, 44615605 - 44615456
Alignment:
Q  40 caaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtatt 139  Q
    |||||| ||| | |||||||||||||||||| ||| ||  |||||| |||||||| ||||||||||||||||| ||| |||||||||||||||| |||||    
T  44615605 caaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtatt 44615506  T
Q  140 ttctttcatgttagctttcaactcacgcgctagcttcaatgcttcttctc 189  Q
    |||||||||||||||||||||||||| |||||||||||| ||||| ||||    
T  44615505 ttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctc 44615456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 29 - 189
Target Start/End: Complemental strand, 39153266 - 39153106
Alignment:
Q  29 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 128  Q
    ||||||| || |||||||||  | ||||||||||| ||| ||| |||||  |||||||||||||||||||| || |||||| || |||||| ||||||||    
T  39153266 agcaacaaatgcaaaaagctccaagacttcatctttatcgaaagaagtaaccaatccataaatcgacaaaaccagtagaaaaccaagaaccaccaaagaa 39153167  T
Q  129 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcttctc 189  Q
    ||||||||||||||||| || ||||||||||| ||| | || || ||||||||||||||||    
T  39153166 ttttcagtattttcttttattttagctttcaaatcatgtgcgagtttcaatgcttcttctc 39153106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 39138826 - 39138693
Alignment:
Q  53 gacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgtta 152  Q
    ||||||||||||||||||||||||| ||||| ||||||  |||||||||| |||||| ||||||||| ||| |||||||||||||||   ||||||||||    
T  39138826 gacttcatcttcatcaaaataagtaagcaattcataaactgacaaaatcagtagaaaaccgagaaccaccagagaattttcagtatt---tttcatgtta 39138730  T
Q  153 gctttcaactcacgcgctagcttcaatgcttcttctc 189  Q
    |||||||  | | | ||||||||||||||||||||||    
T  39138729 gctttcagattaagtgctagcttcaatgcttcttctc 39138693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 29 - 186
Target Start/End: Original strand, 39387469 - 39387626
Alignment:
Q  29 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 128  Q
    ||||||| || |||||||||  |  ||||||||||| |||||||||  | |||  |||||||| ||||||| ||  ||||| || |||||  ||||||||    
T  39387469 agcaacaaatgcaaaaagctccaaaacttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaa 39387568  T
Q  129 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttctt 186  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  39387569 ttttcagtattttctttcatgttagcttttaaatcacgcgctagcttcaatgcttctt 39387626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 53 - 186
Target Start/End: Original strand, 39472763 - 39472896
Alignment:
Q  53 gacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgtta 152  Q
    ||||||||||||||||||| ||||| ||||| ||||||| ||||||| || |||||| || |||||  ||||||||||||||||||||||||||||||||    
T  39472763 gacttcatcttcatcaaaagaagtaagcaattcataaattgacaaaagcagtagaaaaccaagaactaccaaagaattttcagtattttctttcatgtta 39472862  T
Q  153 gctttcaactcacgcgctagcttcaatgcttctt 186  Q
     ||||||| ||| | || ||||||||||| ||||    
T  39472863 actttcaaatcaagtgcgagcttcaatgcgtctt 39472896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 29 - 189
Target Start/End: Complemental strand, 39216864 - 39216704
Alignment:
Q  29 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 128  Q
    |||||||||| |||||||||  |  |||||||||||| ||||| |||||  |||||||||||| ||||||| ||  ||||| ||||||||| ||||||||    
T  39216864 agcaacagatgcaaaaagctccaaaacttcatcttcaccaaaagaagtaaccaatccataaattgacaaaagcagaagaaaaccgagaaccaccaaagaa 39216765  T
Q  129 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcttctc 189  Q
    |||| |||||||||  ||||||||| |||||| |||   ||||||||||||||||||||||    
T  39216764 tttttagtattttcactcatgttagatttcaaatcaaatgctagcttcaatgcttcttctc 39216704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 29 - 189
Target Start/End: Original strand, 39396627 - 39396787
Alignment:
Q  29 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 128  Q
    |||||| ||| |||||||||  |  |||||||||||||| ||| ||||| ||||||||||||| ||||||| ||| | ||| || |||||| ||||||||    
T  39396627 agcaaccgatgcaaaaagctccaaaacttcatcttcatcgaaagaagtaagcaatccataaattgacaaaagcaacaaaaaaccaagaaccgccaaagaa 39396726  T
Q  129 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcttctc 189  Q
    ||||||||||||||| | |||| |||| |||| ||| | |||||||||| |||||||||||    
T  39396727 ttttcagtattttctctaatgtaagctctcaaatcatgtgctagcttcagtgcttcttctc 39396787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 56 - 189
Target Start/End: Complemental strand, 39371297 - 39371164
Alignment:
Q  56 ttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttagct 155  Q
    |||||||||||||||| |||||  |||||||||| | ||||||| ||||||||| || |||||| |||||| ||||| | |||||||||||||||| |||    
T  39371297 ttcatcttcatcaaaagaagtaaccaatccataatttgacaaaagcaatagaaaaccaagaaccaccaaaggatttttactattttctttcatgttggct 39371198  T
Q  156 ttcaactcacgcgctagcttcaatgcttcttctc 189  Q
    ||||  ||| | ||||||||||||||||| ||||    
T  39371197 ttcatatcaagtgctagcttcaatgcttcatctc 39371164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 54 - 189
Target Start/End: Original strand, 39205742 - 39205877
Alignment:
Q  54 acttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttag 153  Q
    |||||||||| ||||||| ||  | |||||  |||||||||||||| || |||||| || |||||| ||| |||||||||||||||||||||||| ||||    
T  39205742 acttcatctttatcaaaagaatcaagcaatttataaatcgacaaaagcagtagaaaaccaagaaccgccatagaattttcagtattttctttcatcttag 39205841  T
Q  154 ctttcaactcacgcgctagcttcaatgcttcttctc 189  Q
    ||||||| |||   |||||||||||||||| |||||    
T  39205842 ctttcaagtcaaatgctagcttcaatgctttttctc 39205877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 29 - 186
Target Start/End: Original strand, 39196485 - 39196642
Alignment:
Q  29 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 128  Q
    ||||||| || |||||||||  |  |||||||||||||||||| ||  | |||||  |||||| ||||||| ||  ||||| || |||||| ||||||||    
T  39196485 agcaacaaatgcaaaaagctccaaaacttcatcttcatcaaaagaatcaagcaatttataaattgacaaaagcagcagaaagccaagaaccgccaaagaa 39196584  T
Q  129 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttctt 186  Q
    ||||||||||| || ||||||||||||||||| |||   |||||||||||||||||||    
T  39196585 ttttcagtattgtcattcatgttagctttcaaatcaaatgctagcttcaatgcttctt 39196642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 56 - 189
Target Start/End: Original strand, 39380496 - 39380629
Alignment:
Q  56 ttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttagct 155  Q
    |||||||||||| ||| ||||| ||||||||||||| ||||||| || ||||||||| |||||| ||| ||||| ||||||||| ||| | |||| ||||    
T  39380496 ttcatcttcatcgaaagaagtaagcaatccataaattgacaaaagcagtagaaatccaagaaccgccacagaatcttcagtattctctcttatgtaagct 39380595  T
Q  156 ttcaactcacgcgctagcttcaatgcttcttctc 189  Q
    ||||| ||| | |||||| ||| |||||||||||    
T  39380596 ttcaaatcaagtgctagcgtcagtgcttcttctc 39380629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 29 - 186
Target Start/End: Original strand, 39413004 - 39413161
Alignment:
Q  29 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 128  Q
    ||||||| || |||||||||  | || |||||||||||| ||| |||||  ||||||| |||  ||||||| ||| ||||| |  |||||| |||||||     
T  39413004 agcaacaaatgcaaaaagctccaagatttcatcttcatccaaaaaagtaaccaatccacaaactgacaaaagcaacagaaaactaagaaccgccaaagag 39413103  T
Q  129 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttctt 186  Q
    ||||| ||||||||||||| |||||||||||| ||| | |||||||||||||||||||    
T  39413104 ttttcggtattttctttcaagttagctttcaaatcaagtgctagcttcaatgcttctt 39413161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 61 - 189
Target Start/End: Original strand, 44895114 - 44895242
Alignment:
Q  61 cttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttagctttcaa 160  Q
    ||||||| ||| |||||  |||||||||||| ||||||| || |||||| || |||||| |||||||||||||||||||| |||| ||||||||||| ||    
T  44895114 cttcatcgaaagaagtaatcaatccataaattgacaaaagcagtagaaaaccaagaaccaccaaagaattttcagtatttccttttatgttagctttgaa 44895213  T
Q  161 ctcacgcgctagcttcaatgcttcttctc 189  Q
     | | | |||||||||||||||| |||||    
T  44895214 tttatgtgctagcttcaatgcttgttctc 44895242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 54 - 180
Target Start/End: Original strand, 39478294 - 39478420
Alignment:
Q  54 acttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttag 153  Q
    |||||| |||| || ||| ||||| ||||||||||||| ||||||| || ||||||  | |||||  || |||||||||||||||||||| | |||| ||    
T  39478294 acttcaccttcttcgaaagaagtaagcaatccataaattgacaaaagcagtagaaaatcaagaactgccgaagaattttcagtattttctctgatgtaag 39478393  T
Q  154 ctttcaactcacgcgctagcttcaatg 180  Q
    ||||||| ||| | |||||||||||||    
T  39478394 ctttcaaatcatgtgctagcttcaatg 39478420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 188
Target Start/End: Original strand, 39421161 - 39421317
Alignment:
Q  29 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 128  Q
    ||||||| || |||||||||  |  |||||||||||||  |||||||||  ||||   ||||| ||||||| || |||||| |||||||||   |||  |    
T  39421161 agcaacaaatgcaaaaagctccaacacttcatcttcattgaaataagtaaccaattggtaaattgacaaaagcagtagaaaaccgagaacc---aaatta 39421257  T
Q  129 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcttct 188  Q
    |||||||||||||||| ||| ||||||||||| ||| | || ||||||||||||||||||    
T  39421258 ttttcagtattttcttccatattagctttcaaatcaagagcgagcttcaatgcttcttct 39421317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 54 - 189
Target Start/End: Complemental strand, 39223893 - 39223758
Alignment:
Q  54 acttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttag 153  Q
    |||||||||||||||||  ||  | |||||  |||||| ||||||| ||  ||||| || |||||| ||||||| ||||||||||| |||||||||||      
T  39223893 acttcatcttcatcaaatgaatcaagcaatttataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttcagtattgtctttcatgtttt 39223794  T
Q  154 ctttcaactcacgcgctagcttcaatgcttcttctc 189  Q
    |||| || |||   |||||||||||||||| |||||    
T  39223793 cttttaaatcatatgctagcttcaatgctttttctc 39223758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 157
Target Start/End: Original strand, 39188738 - 39188857
Alignment:
Q  38 tccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagta 137  Q
    ||||||||||||||  || ||||||||||  ||| ||| |  ||| |||||||| || | ||  | |||||| || |||||| ||||||||||| || ||    
T  39188738 tccaaaaagctttaaaacatcatcttcattgaaagaaggaaccaaaccataaattgatagaaggagtagaaaaccaagaaccaccaaagaatttccatta 39188837  T
Q  138 ttttctttcatgttagcttt 157  Q
    ||||||||||||||||||||    
T  39188838 ttttctttcatgttagcttt 39188857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 42 - 189
Target Start/End: Complemental strand, 39604510 - 39604363
Alignment:
Q  42 aaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtatttt 141  Q
    ||||||||||  |||||||||||||| ||| ||| |  |||||||||||| |||| ||  | |||||| || |||||  |||   ||||||| |||||||    
T  39604510 aaaagctttaaaacttcatcttcatcgaaagaaggagccaatccataaattgacacaaggagtagaaaacccagaactgccaccaaattttcggtatttt 39604411  T
Q  142 ctttcatgttagctttcaactcacgcgctagcttcaatgcttcttctc 189  Q
    |  | ||||||| |||||| | | | |||||||||| |||||||||||    
T  39604410 cacttatgttagatttcaaattaagtgctagcttcattgcttcttctc 39604363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 44730298 - 44730162
Alignment:
Q  53 gacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgtta 152  Q
    |||||||||| ||||||| |||||| |||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  44730298 gacttcatctccatcaaagtaagtaagcaatctataaatcgtcaaaatcaatagaaatccgagaacctcctaagaattttcagtattttcttttatgtta 44730199  T
Q  153 gctttcaactcacgcgctagcttcaatgcttcttctc 189  Q
    |||||||||||| | ||||||||||| ||||| ||||    
T  44730198 gctttcaactcatgtgctagcttcaaagcttcatctc 44730162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 31 - 189
Target Start/End: Complemental strand, 45343170 - 45343012
Alignment:
Q  31 caacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaatt 130  Q
    |||||||| |||||||||  | ||||||||||| ||||||| ||||| ||||| ||| ||| |||||||||| |||||| || ||||| | ||| || ||    
T  45343170 caacagatacaaaaagctccaagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaaccaagaacgttcaatgattt 45343071  T
Q  131 ttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcttctc 189  Q
    |||||||||| |||||| |||||||||||||||| | |||||||| |||||||||||||    
T  45343070 ttcagtatttcctttcacgttagctttcaactcaagtgctagcttgaatgcttcttctc 45343012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 28 - 189
Target Start/End: Original strand, 44949869 - 44950030
Alignment:
Q  28 cagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaaga 127  Q
    ||||||||||| || |||||||   ||| ||||||  |||||| |||||| |||||||||||||||  | |||||||||||||| |||||||||||||||    
T  44949869 cagcaacagatgcataaagcttagagacatcatctcgatcaaagtaagtaagcaatccataaatcgttataatcaatagaaatctgagaacctccaaaga 44949968  T
Q  128 attttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcttctc 189  Q
    ||||| |||||||||||| || |||  |||||||||| | ||||||||||| ||||| ||||    
T  44949969 atttttagtattttcttttattttaaatttcaactcatgtgctagcttcaaagcttcatctc 44950030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 28 - 184
Target Start/End: Complemental strand, 17060854 - 17060698
Alignment:
Q  28 cagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaaga 127  Q
    ||||||||||| ||||||| |  | ||||||||||| |||||||||||||  ||||||||||| |||||| ||||| |||||||||||||||||||| ||    
T  17060854 cagcaacagatgcaaaaagatccaagacttcatcttgatcaaaataagtaaacaatccataaaccgacaagatcaacagaaatccgagaacctccaatga 17060755  T
Q  128 attttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttc 184  Q
    || |||||||||| |||| |||||||||||||||||| | ||||||||||| |||||    
T  17060754 atattcagtatttgcttttatgttagctttcaactcatgtgctagcttcaaagcttc 17060698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 29 - 186
Target Start/End: Complemental strand, 33562496 - 33562339
Alignment:
Q  29 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 128  Q
    ||||||| || |||||||||  |  |||||||||||||||||| ||  | |||||  |||||| ||||||| ||  ||||| || |||||| ||||| ||    
T  33562496 agcaacaaatgcaaaaagctccaaaacttcatcttcatcaaaagaatcaagcaatttataaattgacaaaagcatcagaaaaccaagaaccgccaaaaaa 33562397  T
Q  129 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttctt 186  Q
      |||||||||||||||||||||||||||||| |||   |||||||||||||||||||    
T  33562396 aattcagtattttctttcatgttagctttcaaatcaaatgctagcttcaatgcttctt 33562339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 28 - 189
Target Start/End: Original strand, 5849 - 6010
Alignment:
Q  28 cagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaaga 127  Q
    ||||||||||| || |||||||   ||| ||||||  |||||| |||||| |||||||||||||||  | |||||||||||||| |||||||||||||||    
T  5849 cagcaacagatgcataaagcttagagacatcatctcgatcaaagtaagtaagcaatccataaatcgttataatcaatagaaatctgagaacctccaaaga 5948  T
Q  128 attttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcttctc 189  Q
    ||||| |||||||||||| || |||  |||||||||| | ||||||||||| ||||| ||||    
T  5949 atttttagtattttcttttattttaaatttcaactcatgtgctagcttcaaagcttcatctc 6010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 19809083 - 19808950
Alignment:
Q  53 gacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgtta 152  Q
    ||||||||||||||||||||||||| ||||| ||||||  ||||||| || |||||| || |||||| ||| ||||||||||||| |   ||||||||||    
T  19809083 gacttcatcttcatcaaaataagtaagcaattcataaactgacaaaagcagtagaaaaccaagaaccaccagagaattttcagtact---tttcatgtta 19808987  T
Q  153 gctttcaactcacgcgctagcttcaatgcttcttctc 189  Q
    |||||||| ||| | ||||||||||||| ||||||||    
T  19808986 gctttcaaatcaagtgctagcttcaatgtttcttctc 19808950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 189
Target Start/End: Complemental strand, 16114477 - 16114414
Alignment:
Q  126 gaattttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcttctc 189  Q
    ||||||| |||||| ||| |||||| ||||||||| || ||||||||||||||||||| |||||    
T  16114477 gaatttttagtattctctctcatgtaagctttcaaatcgcgcgctagcttcaatgctttttctc 16114414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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